Skip to main content
. 2024 Feb 7;65(2):17. doi: 10.1167/iovs.65.2.17

Table 3.

Structure Properties of Variant Proteins

Variants Wild-Type E72K Q80H R102W S134P Y151H G171E R182C R197H R200C P203L R213W R213Q
hbnumsp 427 401 396 395 394 391 416 397 399 391 391 379 388
hbnumsp diff 0.00% −6.09% −7.26% −7.49% −7.73% −8.43% −2.58% −7.03% −6.56% −8.43% −8.43% −11.24% −9.13%
hbnumpp 100 105 104 116 106 99 100 103 108 101 101 100 102
hbnumpp diff 0.00% 5.00% 4.00% 16.00% 6.00% −1.00% 0.00% 3.00% 8.00% 1.00% 1.00% 0.00% 2.00%
SASA 99.26 104.36 97.3 98.98 104.68 97.98 100.46 94.23 100.09 97.21 98.42 97.75 100.7
SASA diff 0.00% 5.13% −1.98% −0.28% 5.46% −1.29% 1.21% −5.08% 0.84% −2.07% −0.85% −1.52% 1.45%
Hydrophilic area 9215.928 9141.156 8827.822 9097.777 9138.324 9009.037 9411.617 8974.289 8930.672 8719.049 9201.594 8859.148 9176.891
Hydrophilic area diff 0.00% −0.81% −4.21% −1.28% −0.84% −2.24% 2.12% −2.62% −3.10% −5.39% −0.16% −3.87% −0.42%
Hydrophobic area 759.629 924.825 810.795 808.761 953.833 740.211 812.356 642.217 794.462 694.482 669.083 709.807 801.754
Hydrophobic area diff 0.00% 21.75% 6.74% 6.47% 25.57% −2.56% 6.94% −15.46% 4.59% −8.58% −11.92% −6.56% 5.55%
RMSD 0.22 0.26 0.21 0.22 0.25 0.23 0.22 0.23 0.23 0.22 0.22 0.23 0.23
RMSD diff 0.00 0.05 −0.01 0.00 0.03 0.02 0.00 0.02 0.02 0.01 0.00 0.01 0.01
Delta_delta_G −0.27 1.16 3.08 0.49 2.79 3.32 0.06 3.44 1.36 1.32 25.41 3.76 −2.21
Grantham distance 0.00 56.00 24.00 101.00 74.00 83.00 98.00 180.00 29.00 180.00 98.00 101.00 43.00
Residue accessibility 0.00 104.50 27.12 41.61 8.82 1.00 58.43 88.16 61.88 39.72 0.12 0.00 0.00
Alpha 0.00 5.38 5.98 3.59 5.98 5.38 3.59 2.39 4.19 4.19 1.79 0.00 4.19
Beta 38.92 33.53 37.12 35.32 35.32 36.52 35.92 32.33 31.13 35.92 38.32 33.53 40.71
Other 61.07 61.07 56.88 61.07 58.68 58.08 60.47 65.26 64.67 59.88 59.88 66.46 55.08
Beta diff 0.00 −0.14 −0.05 −0.09 −0.09 −0.06 −0.08 −0.17 −0.20 −0.08 −0.02 −0.14 0.05
Disulfide bond 2 (Cys63-Cys219, Cys 110-Cys142)

diff, difference.