| AA | all-atom |
| CG | coarse-grained |
| MD | molecular dynamics |
| 1am | monomeric amylin |
| 2am | dimeric amylin homo-amylin oligomer |
| 4am | tetrameric amylin in homo-amylin oligomer |
| 1tau | monomeric tau |
| 2tau | dimeric tau in homo-tau oligomer |
| 4tau | tetrameric tau in homo-tau oligomer |
| 1tam | dimeric tau-amylin oligomer |
| 2tam | tetrameric tau-amylin oligomer |
| 1am’ | monomeric amylin in 1tam |
| 2am’ | dimeric amylin in 2tam |
| 1tau’ | monomeric tau in 1tam |
| 2tau’ | dimeric tau in 2tam |
| PC | phosphatidylcholine |
| PS | phosphatidylserine |
| CHOL | cholesterol |
| DPPC | dipalmitoyl-PC |
| DLPC | dilinoleoyl-PC |
| POPS | 1-palmitoyl, 2-oleoyl-PS |
| GM1 | monosialotetrahexosylganglioside |
| Lo | liquid-ordered |
| Ld | liquid-disordered |
| Lod | mixed Lo/Ld |
| AL | annular lipid |
| nAL | non-annular lipid |
| mindist | minimum distance |
| DSSP | Define Secondary Structure of Proteins |