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[Preprint]. 2024 Jan 30:2024.01.27.577580. [Version 1] doi: 10.1101/2024.01.27.577580

Figure 1. Sparsely filled Forward/Backward matrix capturing most of the probability mass.

Figure 1.

Top panel (A) shows heatmap of scores per cell in the Match State matrix for the sequence Q01LW8_ORYSA aligned to (the model for its matching family, DAO (FAD dependent oxidoreductase); bottom panel (B) shows the sparse set of (non-blue) cells that make up the cloud used for computing sparse Forward/Backward. The model positions are aligned along the y-axis and the sequence positions are aligned along the x-axis.