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[Preprint]. 2024 Jan 30:2024.01.27.577580. [Version 1] doi: 10.1101/2024.01.27.577580

Figure 3. Recall as a function of false annotation rate.

Figure 3.

The protein domain benchmark consists of 25,688 true target sequences from 1,339 Pfam families, mixed with 2 million shuffled sequences from Uniprot. nail and HMMER were each tested with default parameters; MMseqs2 was tested with both default and sensitive (-s 7.5 --max-seqs 1000) settings.