List of Contributors
| Name | ORCID | Affiliation | Funding Statement | Contribution* | |
|---|---|---|---|---|---|
| Nikki Bialy | nbialy@morgridge.org | https://orcid.org/0000-0001-9681-9632 | BioImaging North America (BINA RRID: SCR_024409), Morgridge Institute for Research, 330 North Orchard Street, Madison, WI 53715, USA. | NB is supported through a grant from the Chan Zuckerberg Initiative DAF, an advised fund of Silicon Valley Community Foundation, to the Morgridge Institute for Research for BioImaging North America (BINA). | Resources, Writing - Original Draft, Writing - Review & Editing, Endorsement, Supervision, Project Administration |
| Frank Alber | falber@g.ucla.edu | https://orcid.org/0000-0003-1981-8390 | Department of Microbiology, Immunology & Molecular Genetics, University of California Los Angeles, USA | Endorsement | |
| Brenda Andrews | brenda.andrews@utoronto.ca | https://orcid.org/0000-0001-6427-6493 | The Donnelly Centre, University of Toronto, Toronto Canada M5S 3E1 | Work in the Andrews lab is supported by the NIH (R01HG005853) and the Canadian Institutes of Health Research (CIHR). BA holds at Tier 1 Canada Research Chair in Systems Genetics and Cell Biology | Writing - Original Draft, Endorsement |
| Michael Angelo | mangelo0@stanford.edu | Stanford University School of Medicine, Palo Alto, CA, USA | Writing - Original Draft | ||
| Brian Beliveau | beliveau@uw.edu | https://orcid.org/0000-0003-1314-3118 | University of Washington | BJB acknowledges support from the National Institutes of Health under grant 1R35GM137916 (NIGMS). | Writing - Original Draft |
| Lacramioara (Lacra) Bintu | lbintu@stanford.edu | https://orcid.org/0000-0001-5443-6633 | Stanford University, Stanford, CA, USA | Endorsement | |
| Alistair Boettiger | aboettig@stanford.edu | https://orcid.org/0000-0002-3554-5196 | Stanford University, Stanford, CA, USA | Writing - Review & Editing, Endorsement | |
| Ulrike Boehm | ulrike.boehm@gmail.com | https://orcid.org/0000-0001-7471-2244 | Carl Zeiss AG, Oberkochen, Germany | Writing - Review & Editing, Endorsement | |
| Claire M. Brown | claire.brown@mcgill.ca | https://orcid.org/0000-0003-1622-663X | Advanced BioImaging Facility (ABIF), McGill University, Montreal, Quebec, H3G 0B1, Canada | This project has been made possible in part by grant number 2020-225398 from the Chan Zuckerberg Initiative DAF, an advised fund of Silicon Valley Community Foundation. | Endorsement |
| Mahmoud Bukar Maina | M.Bukar-Maina@sussex.ac.uk | https://orcid.org/0000-0002-7421-3813 | University of Sussex, Sussex, UK & Biomedical Science Research and Training Centre, Yobe State University, Nigeria | Writing - Review & Editing, Endorsement | |
| James J. Chambers | iichambe@umass.edu | https://orcid.org/0000-0003-3883-8215 | Institute for Applied Life Sciences, University of Massachusetts, Amherst, MA 01003, USA | Endorsement | |
| Beth A. Cimini | bcimini@broadinstitute.org | https://orcid.org/0000-0001-9640-9318 | Broad Institute of MIT and Harvard, Imaging Platform, Cambridge, MA, USA | This publication has been made possible in part by CZI grant 2020-225720 (DOI:10.37921/977328pjvbca) from the Chan Zuckerberg Initiative DAF, an advised fund of Silicon Valley Community Foundation (funder DOI 10.13039/100014989. This work was also supported by the Center for Open Bioimage Analysis (COBA) funded by the National Institute of General Medical Sciences P41 GM135019 | Writing - Review & Editing, Endorsement |
| Kevin Eliceiri | eliceiri@wisc.edu | https://orcid.org/0000-0001-8678-670X | Morgridge Institute for Research and the University of Wisconsin-Madi son | This work was supported by the Center for Open Bioimage Analysis (COBA) funded by the National Institute of General Medical Sciences P41 GM135019 (Cimini and Eliceiri) | Writing - Review & Editing, Endorsement |
| Rachel Errington | ErringtonRJ@cardiff.ac.uk | School of Medicine, Cardiff University, Cardiff, UK | Writing - Original Draft, Writing - Review & Editing | ||
| Orestis Faklaris | orestis.faklaris@mri.cnrs.fr | https://orcid.org/0000-0001-5965-5405 | BCM, Univ. Montpellier, CNRS, INSERM, Montpellier 34293, France | OF is supported by the French National Research Agency (ANR-10-INBS-04). | Writing - Review & Editing, Endorsement |
| Nathalie Gaudreault | nathalieg@alleninstitute.org | https://orcid.org/0000-0002-9220-5366 | Allen Institute for Cell Science, Seattle, WA, USA | We wish to thank the Allen Institute for Cell Science Founder, Paul G. Allen, for his vision, encouragement, and support. | Writing - Review & Editing, Endorsement |
| Ronald N. Germain | rgermain@niaid.nih.gov | https://orcid.org/0000-0003-1495-9143 | Laboratory of Immune System Biology, NIAID, NIH | Intramural Program of NIAID, NIH. | Writing - Review & Editing, Endorsement |
| Wojtek Goscinski | w.goscinski@anif.org.au | https://orcid.org/0000-0001-6587-1016 | National Imaging Facility, Brisbane, Australia | The authors acknowledge the facilities and scientific and technical assistance of the National Imaging Facility, a National Collaborative Research Infrastructure Strategy (NCRIS) capability | Endorsement |
| David Grunwald | David.Grunwald@umassmed.edu | https://orcid.org/0000-0001-9067-804X | RNA Therapeutics Institute, UMass Chan Medical School, Worcester MA 01605, USA | Writing - Review & Editing, Endorsement | |
| Michael Halter | michael.halter@nist.gov | https://orcid.org/0000-0002-1628-324X | National Institute of Standards and Technology, Gaithersburg, MD, USA | Writing - Review & Editing, Endorsement | |
| Dorit Hanein | dorit@ucsb.edu | https://orcid.org/0000-0002-6072-4946 | Departments of Biochemistry and Chemistry, of Biological Engineering, University of California, Santa Barbara, CA, USA | DH research is in part sponsored by the U.S. Army Research Office and accomplished under contract W911NF-19-D-0001 for the Institute for Collaborative Biotechnologies. | Writing - Original Draft, Writing - Review & Editing, Endorsement |
| John W. Hickey | john.hickey@duke.edu | https://orcid.org/0000-0001-9961-7673 | Department of Biomedical Engineering, Duke University Durham, North Carolina, USA | Writing - Original Draft, Endorsement | |
| Judith Lacoste | jlacoste@miacellavie.com | https://orcid.org/0000-0002-8783-8599 | MIA Cellavie Inc., Montreal, Quebec, H1K 4G6, Canada | Endorsement | |
| Alex Laude | alex.laude@newcastle.ac.uk | https://orcid.org/0000-0002-3853-1187 | BioImaging Unit, Newcastle University, UK | Newcastle University | Endorsement |
| Emma Lundberg | emmalu@stanford.edu | Stanford University, California, USA and SciLifeLab, KTH Royal Institute of Technology, Stockholm, Sweden | Endorsement | ||
| Jian Ma | jianma@cs.cmu.edu | https://orcid.org/0000-0002-4202-5834 | Carnegie Mellon University, Pittsburgh, PA, USA | Endorsement | |
| Leonel Malacrida | lmalacrida@pasteur.edu.uy | https://orcid.org/0000-0001-6253-9229 | Institut Pasteur de Montevideo, & Universidad de la Republica, Montevideo, Uruguay | Endorsement | |
| Josh Moore | josh@openmicroscopy.org | https://orcid.org/0000-0003-4028-811X | German BioImaging-Ges ellschaft fur Mikroskopie und Bildanalyse e.V., Constance, Germany | JM is supported by the Deutsche Forschungsgemeinsch aft (DFG, German Research Foundation) - 501864659 as part of NFDI4BIOIMAGE. | Writing - Review & Editing, Endorsement |
| Glyn Nelson | glyn.nelson@ncl.ac.uk | http://orcid.org/0000-0002-1895-4772 | Bioimaging Unit, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK | Newcastle University, UK | Writing - Review & Editing, Endorsement |
| Elizabeth Kathleen Neumann | ekneumann@ucdavis.edu | https://orcid.org/0000-0002-6078-3321 | Department of Chemistry, University of California, Davis, Davis, California, USA | University of California, Davis | Endorsement |
| Roland Nitschke | Roland.Nitschke@biologie.uni-freiburg.de | https://ercid.erg/0000-0002-9397-8475 | Life Imaging Center, Signalling Research Centres CIBSS and BIOSS, University of Freiburg, 79104 Freiburg, Germany | R.N. was supported by grant NI 451/10–1 from the German Research Foundation and grant 03TN0047B ‘FluMiKal’ from the German Federal Ministry for Economic Affairs and Climate Action | Writing - Review & Editing, Endorsement |
| Shuichi Onami | sonami@riken.jp | https://orcid.org/0000-0002-8255-1724 | RIKEN Center for Biosystems Dynamics Research, Kobe, Japan | Endorsement | |
| Jaime A. Pimentel | arturo.pimentel@ibt.unam.mx | https://orcid.org/0000-0001-8569-0466 | Laboratorio Nacional de Microscopia Avanzada, Instituto de Biotecnologia, Universidad Nacional Autonoma de Mexico, Cuernavaca, Morelos, 62210, Mexico | Writing - Review & Editing, Endorsement | |
| Anne L. Plant | anne.plant@nist.gov | https://orcid.org/0000-0002-8538-401X | National Institute of Standards and Technology, Gaithersburg, MD, USA | Writing - Review & Editing, Endorsement | |
| Andrea J. Radtke | andrea.radtke@nih.gov | https://orcid.org/0000-003-4379-8967 | Laboratory of Immune System Biology, Lymphocyte Biology Section and Center for Advanced Tissue Imaging, NIAID, NIH, Bethesda, MD, USA | AJR is supported by the Intramural Research Program of the NIH, National Institute of Allergy and Infectious Diseases (NIAID) and National Cancer Institute (NCI) | Writing - Original Draft, Writing - Review & Editing, Endorsement |
| Bikash Sabata | bsabata@altoslabs.com | NA | Altos Labs, Redwood City, CA, USA | NA | Writing - Review & Editing, Endorsement |
| Denis Schapiro | Denis.Schapiro@uni-heidelberg.de | https://orcid.org/0000-0002-9391-5722 | Institute for Computational Biomedicine, Heidelberg University Hospital, Heidelberg, Germany; Institute of Pathology, Heidelberg University Hospital, Heidelberg, Germany; Translational Spatial Profiling Center (TSPC), Heidelberg, Germany | DS is supported by the German Federal Ministry of Education and Research (BMBF 01ZZ2004); the Ministry for Science, Research and Science Baden-Wurttemberg „AI Health Innovation Cluster” and “MULTI-SPACE”; Bruno und Helene Joester Stiftung and research funding from Cellzome, a GSK company. | Writing - Original Draft, Writing - Review & Editing, Endorsement |
| Johannes Schoneberg | jschoeneberg@health.ucsd.edu | https://orcid.org/0000-0001-7083-1828 | University of California, San Diego, CA, USA | JS is supported by the Hartwell Foundation, the W.M.Keck Foundation, the Brain Research Foundation, The Chan Zuckerberg Foundation, and the NIH (1DP2GM150022–01, 1R01GM148765–01). | Writing - Review & Editing, Endorsement |
| Jeffrey M. Spraggins | jeff.spraggins@Vanderbilt.Edu | https://orcid.org/0000-0001-9198-5498 | Department of Cell & Developmental Biology, Vanderbilt University School of Medicine, Nashville, TN, USA | J.M.S. is supported by the National Institutes of Health U01DK133766 (NIDDK), U54DK134302 (NIDDK), U54EY032442 (NEI), R01AG078803 (NIA), R01AI145992 (NIAID), and R01AI138581 (NIAID). | Writing - Review & Editing |
| Damir Sudar | dsudar@qitissue.com | https://orcid.org/0000-0002-2510-7272 | Quantitative Imaging Systems LLC, Portland, OR, USA | DS is supported by the National Institutes of Health U2CCA23380 (NCI) and 1 R44 CA250861 (NCI). | Endorsement |
| Wouter-Michie l Adrien Maria Vierdag | michiel.vierdag@embl.de | https://orcid.org/0000-0003-1666-5421 | Genome Biology Unit, European Molecular Biology Laboratorium, Heidelberg, Baden-Wurttem berg, Germany | WMV receives research funding from Cellzome, a GSK company. | Writing - Original Draft, Writing - Review & Editing |
| Niels Volkmann | nvo@ucsb.edu | https://orcid.org/0000-0003-1328-6426 | Departments of Bioengineering, of Biological Engineering, Electrical and Computer Engineering, and Biomolecular Science and Engineering Program, University of California, Santa Barbara, CA, USA | Writing - Original Draft, Writing - Review & Editing, Endorsement | |
| Carolina Wahlby | carolina.wahlby@it.uu.se | https://orcid.org/0000-0002-4139-7003 | Dept. Information Technology and Science for LifeLaboratory, Uppsala University, Uppsala, Sweden | Writing - Review & Editing, Endorsement | |
| Siyuan (Steven) Wang | siyuan.wang@yale.edu | https://orcid.org/0000-0001-6550-4064 | Yale University | Endorsement | |
| Ziv Yaniv | zivyaniv@nih.gov | https://orcid.org/0000-0003-0315-7727 | Bioinformatics and Computational Bioscience Branch, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA | Z.Y. is supported by the Bioinformatics and Computational Biosciences Branch (BCBB) Support Services Contract HHSN316201300006 W/75N93022F00001 to Guidehouse Inc. | Writing - Original Draft, Writing - Review & Editing, Endorsement |
| Caterina Strambio-De-Castillia | caterina.strambio@umassmed.edu | https://orcid.org/0000-0002-1069-1816 | Program in Molecular Medicine, UMass Chan Medical School, Worcester MA 01605, USA | Conceptualization, Methodology Resources, Writing - Original Draft, Writing - Review & Editing, Endorsement, Supervision, Funding acquisition |