REAGENT or RESOURCE	SOURCE	IDENTIFIER
Biological samples
Cervico-vaginal fluid	Homo sapiens	N/A
Plasma samples	Homo sapiens	N/A
Chemicals, peptides, and recombinant proteins
LC/MS grade water	Fisher Chemical	Cat#51140
DL-Dithiothreitol (DTT)	Sigma-Aldrich	Cat#43815
2-Iodoacetamide (IAA)	Sigma-Aldrich	Cat#I6125
Sequencing Grade Modified Trypsin	Promega	Cat#V5111
Acetonitrile, LC-MS grade, 99.8%	Fisher Chemical	Cat#047138.M1
Formic acid	Sigma-Aldrich	Cat#F0507
Ammonium bicarbonate, 99%	Fisher Chemical	Cat#393210010
Critical commercial assays
Proximity Extention Assay, custom version.	Olink Proteomics AB	www.olink.com
Deposited data
Deposited data	This paper	https://doi.org/10.17044/scilifelab.24241237
Data published in another paper	Gutiérrez, A. L. et al.20 Identification of Candidate Protein Biomarkers for CIN2+ Lesions from Self-Sampled, Dried Cervico–Vaginal Fluid Using LC-MS/MS. Cancers 2021, Vol. 13, Page 259213, 2592 (2021).	https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD026064
Software and algorithms
MaxQuant software, version 1.5.1.2	https://www.biochem.mpg.de/6304115/maxquant	https://www.maxquant.org/
R version 4.2.2	R Core Team (2022)	https://www.R-project.org/
Adobe Illustrator version 27.9	Adobe Systems Software Ireland Limited	https://www.adobe.com/products/catalog.html
Other
Viba-Brush	Rover Medical Devices BV, Oss, The Netherlands	https://www.roversmedicaldevices.com/cell-sampling-devices/viba-brush/
FTA Elute Micro Card	GE Healthcare, Cardiff, UK	art. no WB129308
Harris Micropunch 3 mm	Whatman	art.no WB100038
Protein LoBind tubes 1.5 mL	Eppendorf	https://www.sigmaaldrich.com/SE/en/product/sigma/ep0030108116
Speedvac system ISS110	ThermoFisher Scientific, Massachusetts, USA	ThermoFisher Scientific
Q-Exactive Plus mass spectrometer	Thermo Finnigan, Bremen, Germany	https://www.thermofisher.com/order/catalog/product/IQLAAEGAAPFALGMBDK