Table 1. Training and Testing Scores for QSAR Models Tested on Different Parameters of Interesta.
Data set
MSE |
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Model | AutoDock Vina train | AutoDock Vina test | CNS MPO train | CNS MPO test | Aggregation train | Aggregation test |
LR | 0.699 | 0.878 | 0.366 | 0.416 | 0.0002 | O(1011) |
DT | 0.009 | 0.359 | 0 | 0.487 | 0.0002 | 0.122 |
RF | 0.047 | 0.178 | 0.28 | 0.232 | 0.052 | 0.516 |
DNN | 0.304 | 0.415 | 0.056 | 0.123 | 0.017 | 0.081 |
Average mean square error (MSE) from cross validation for four different models for the AutoDock Vina scores and CNS MPO scores (training and testing on the Cayman dataset of ∼10,000 compounds) and half-times of aggregation (training and testing on the aggregation dataset of ∼300 compounds18−21). LR = linear regressor, DT = decision tree, RF = random forest, and DNN = deep neural network.