TABLE 2.

Genetic variations in each population: SNPs, multiple nucleotide polymorphisms (MNPs), and insertions and deletions (indels)

	Patient 1	Patient 2	Patient 3	Patient 4
Total # unique SNPs/ MNPs	4,592	1,972	1,638	31
# SNPs/ MNPs separating most divergent isolates	611	326	150	8
Non-synonymous SNPs/ MNPs	2,803	1,294	1,024	24
Synonymous SNPs/ MNPs	1248	484	425	5
SNPs in non-coding regions	541	194	189	2
Total # indels	498	307	330	14
Indels in non-coding regions	204	99	115	2