Table 5.

Validation of pangolin v.4 lineage assignments (pUShER and pangoLEARN) by comparison with MAPLE and Nextclade lineage assignments. Match and mismatch = Direct comparison of matches/mismatches of main call between the distinct methods. AMI (>0.90 = excellent recovery).

Method comparison	Matches	Mismatches	AMI
MAPLE vs pangoLEARN	46,707 (76.92%)	14,012 (23.08%)	0.88336081
MAPLE vs pUShER	47,872 (78.84%)	12,847 (21.16%)	0.906688939
Nextclade vs pangoLEARN	58,346 (96.09%)	2373 (3.91%)	0.948766048
Nextclade vs pUShER	59,216 (97.52%)	1503 (2.48%)	0.966070267