Table 2.
Isolate provenance, NCBI accession numbers, assembly and PGAP annotation metrics of C. botulinum genomes studied (BioProject PRJNA806856)
|
Metric |
PA9508B |
FE9508BRB |
FE9508BPD |
|---|---|---|---|
|
Sample |
Food (pâté) |
Clinical (faeces) |
Clinical (faeces) |
|
BoNT typing |
B5 (silent F2) |
B5 (silent F2) |
B5 (silent F2) |
|
Bioproject |
PRJNA806856 |
PRJNA806856 |
PRJNA806856 |
|
GenBank |
|||
|
Illumina SRA |
SRR18052219 |
SRR18052218 |
SRR18052217 |
|
Nanopore SRA |
SRR18052216 |
SRR18052215 |
SRR18052214 |
|
Chromosome (bp) |
3 977 270 |
3 977 274 |
3 977 274 |
|
Plasmid 1 (bp) |
170 213 |
180 817 |
180 817 |
|
Plasmid 2 (bp) |
13 761 |
13 761 |
13 761 |
|
Plasmid 3 (bp) |
9082 |
9082 |
9082 |
|
GC content (%) |
28.06 |
28.05 |
28.05 |
|
Annotated features |
4014 |
4029 |
4029 |
|
Genes |
3826 |
3839 |
3839 |
|
rRNAs |
24 |
24 |
24 |
|
tRNAs |
81 |
81 |
81 |
|
Non-coding RNAs |
4 |
4 |
4 |
|
Pseudogenes |
79 |
81 |
81 |
|
CRISPR/Cas system |
1 |
1 |
1 |