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[Preprint]. 2024 Feb 5:2024.02.01.577813. [Version 1] doi: 10.1101/2024.02.01.577813

Table 1.

Details of the ten datasets used in this work. the Chemistry column records the version of the 10x Chromium 3′ assay used for the corresponding datasets. The train/test column represents the label of the random split of the datasets used for training and testing Forseti. All datasets are publicly available and can be downloaded from NCBI GEO at https://www.ncbi.nlm.nih.gov/geo/.

# GSE ID Species Cell type Chemistry Read length Cells or Nuclei train/test
1 GSE144136 Human Brain v2 100 Nuclei train
2 GSE148504 Human Cardiomyocytes v3 150 Cells train
3 GSE122743 Human MCF7 v2 75 Cells train
4 GSE125970 Human Ileum/Colon/Rectum v2 150 Cells train
5 GSE130636 Human Retina v3 150 Cells train
6 GSE131736 Human Retina v2 75 Cells train
7 GSE134520 Human Stomach v2 150 Cells train
8 GSE135922 Human RPE/Choroid v3 151 Cells train
9 GSE122357 Mouse Brain v2 151 Cells test
10 GSE125188 Human Liver/Blood/Spleen v2 150 Cells test