Table 1.
Type of different variants in AA lion individuals when aligned to the domestic cat (felCat9), tiger (PanTig1.0), leopard (PanPar1.0), and African lion (PanLeo1.0) reference genomes
| Species | ||||
|---|---|---|---|---|
| Domestic cat (felCat9) | Tiger (PanTig1.0) | Leopard (PanPar1.0) | African lion (PanLeo1.0) | |
| Genome size (kb) | 2,521,863 | 2,391,082 | 2,578,019 | 2,406,807 |
| Total variants | 39,396,930 | 21,298,270 | 14,596,295 | 4,478,478 |
| Multiallelic sites, % | 1.52 | 3.62 | 4.51 | 5.22 |
| Biallelic sites, % | 98.47 | 96.37 | 95.48 | 94.77 |
| SNPs, % | 89.01 | 83.63 | 81.51 | 77.58 |
| Indels, % | 10.78 | 15.82 | 17.81 | 21.81 |
| Mixed (SNPs + indels), % | 0.2 | 0.53 | 0.66 | 0.6 |
| Heterozygote variant sites, % | 2.77 | 6.58 | 9.77 | 29.21 |
| Homozygote variant sites, % | 91.15 | 77.87 | 67.8 | 15.88 |
| Mixed (Het + Hom) sites, % | 6.076 | 15.54 | 22.42 | 54.9 |