Table 3.
Substrate | Enzyme | k obs (min −1 ) b | k rel c |
---|---|---|---|
Gli1 | ADAR1d E1008Q | 2.0 ± 0.1 | 1 |
ADAR1d E1008Q, G1007R | - | - | |
ADAR1d E1008Q, K999N | 0.30 ± 0.03 | 0.1 | |
ADAR1d E1008Q, R892H | 0.02 ± 0.01 | 0.01 | |
ADAR1d E1008Q,Y1112F | 0.4 ± 0.1 | 0.4 |
Gli1 substrate sequence is shown in Table S1. ADAR1d E1008Q reactions were carried out with 15 mM Tris–HCl pH 7.5, 26 mM KCl, 40 mM potassium glutamate, 1.5 mM EDTA, 0.003% (v/v) NP-40, 4% (v/v) glycerol, 0.5 mM DTT, 1 μg/mL yeast tRNA, and 0.16 U/μL RNAse inhibitor.
kobs was calculated by fitting fitting product formed at different time points to the equation: [P]t = α[1 −e−kobst] where [P]t is percent edited, α is the end point fitted to 95%, and kobs is the observed rate constant.
krel = kobs for mutant/kobs for ADAR1d E1008Q.