| Antibodies |
|
|
| LanthaScreen Tb-anti-GST Antibody |
Thermo Fisher Scientific |
Cat#PV3550 |
| Bacterial and virus strains |
|
|
| TurboCells BL21 (DE3) Competent E. coli
|
Genlantis |
Cat#C302020 |
| Chemicals, peptides, and recombinant proteins |
|
|
| Dimethyl sulfoxide |
Thermo Fisher Scientific |
Cat#BP231-100 |
| T0901317 |
Cayman Chemical |
Cat#71810 |
| Rosiglitazone |
MedChemExpress |
Cat#HY-17386 |
| GW0742 |
MedChemExpress |
Cat#HY-13928 |
| SJPYT-299 |
This paper |
N/A |
| SJPYT-300 |
This paper |
N/A |
| SJPYT-301 |
This paper |
N/A |
| SJPYT-302 |
Lin et al.27
|
N/A |
| SJPYT-303 |
This paper |
N/A |
| SJPYT-304 |
This paper |
N/A |
| SJPYT-305 |
This paper |
N/A |
| SJPYT-315 |
Lin et al.27
|
N/A |
| SJPYT-316 |
Lin et al.27
|
N/A |
| SJPYT-317 |
Lin et al.27
|
N/A |
| SJPYT-318 |
This paper |
N/A |
| SJPYT-319 |
Lin et al.27
|
N/A |
| SJPYT-320 |
This paper |
N/A |
| Dulbecco's Modified Eagle's Medium (DMEM) |
ATCC |
Cat#30-2002 |
| RPMI-1640 Medium |
ATCC |
Cat#30-2001 |
| Leibovitz's L-15 Medium |
ATCC |
Cat#30-2008 |
| DMEM, high glucose, HEPES, no phenol red |
Thermo Fisher Scientific |
Cat#21063029 |
| Fetal bovine serum (FBS), Canadian Origin |
Cytiva |
Cat#SH30396.03 |
| HyClone Charcoal/Dextran treated FBS, US Origin |
Cytiva |
Cat#SH30068.03 |
| Hygromycin B (50 mg/mL) |
Thermo Fisher Scientific |
Cat#10687010 |
| Zeocin Selection Reagent |
Thermo Fisher Scientific |
Cat#R25001
|
| Geneticin Selective Antibiotic (G418 Sulfate) (50 mg/mL) |
Thermo Fisher Scientific |
Cat#10131027 |
| Matrigel Growth Factor Reduced Basement Membrane Matrix |
Corning |
Cat#356230 |
| Sodium Pyruvate (100 mM) |
Thermo Fisher Scientific |
Cat#11360070 |
| MEM Non-Essential Amino Acids Solution (100X) |
Thermo Fisher Scientific |
Cat#11140050 |
| NEBuilder HiFi DNA Assembly Master Mix |
New England Biolabs |
Cat#E2621S |
| KpnI-HF |
New England Biolabs |
Cat#R3142S |
| FAM-SRC1-B Peptide: FAM-(PEG)5-CPSSHSSLTERHKILHRLLQEGSPS-NH2
|
Lin et al.46
|
N/A |
| Magnesium chloride, 1M aq. soln., sterile-filtered |
Thermo Fisher Scientific |
Cat#J62411AD |
| Bovine Serum Albumin |
Sigma-Aldrich |
Cat#A3294 |
| Ethylenediamine Tetraacetic Acid (EDTA) |
Thermo Fisher Scientific |
E478-500 |
| Isopropanol |
Thermo Fisher Scientific |
Cat#A416-4 |
| Ethylene glycol |
Sigma-Aldrich |
Cat#102466-500ML |
| Pluronic F-127, 0.2 μm filtered (10% Solution in Water) |
Thermo Fisher Scientific |
Cat#P6866 |
| Lysozyme, Egg White |
Gold Biotechnology |
Cat#12650-88-3 |
| Terrific Broth, Modified, Granulated, 5 Kilograms |
Research Products International |
Cat#T15100-5000.0 |
| D-(+)-Glucose |
Sigma-Aldrich |
Cat#G8270 |
| SIGMAFAST Protease Inhibitor Cocktail Tablets, EDTA-Free |
Sigma-Aldrich |
Cat#S8830 |
| IPTG |
Gold Biotechnology |
Cat#I2481C100 |
| Ampicillin (Sodium), USP Grade |
Gold Biotechnology |
Cat#A-301-100 |
| DTT (Dithiothreitol) (> 99% pure) Protease free |
Gold Biotechnology |
Cat#DTT100 |
| Tris Base Ultra Pure [Tris (Hydroxymethyl) Aminomethane] |
Research Products International |
Cat#T60040-1000.0 |
| Sodium Chloride |
Research Products International |
Cat#S23020-500.0 |
| Glycerol, 99+%, extra pure |
Thermo Fisher Scientific |
Cat#158920025 |
| Imidazole, 99% |
Thermo Fisher Scientific |
Cat#122025000 |
| HisTrap FF |
Cytiva |
Cat#17525501 |
| HiLoad 26/600 Superdex 200 pg |
Cytiva |
Cat#28989336 |
| FuGENE HD Transfection Reagent |
Promega |
Cat#E2311 |
| ProxiPlate-384 Plus F, Black 384-shallow well Microplate |
PerkinElmer |
Cat#6008260 |
| CulturPlate-384, White Opaque 384-well Microplate, Sterile and Tissue Culture Treated |
PerkinElmer |
Cat#6007680 |
| PXR (SXR) Ligand Binding Domain Protein |
Thermo Fisher Scientific |
Cat#PV4841 |
| LXR-a Recombinant Human Protein, Ligand Binding Domain, GST-Tagged |
Thermo Fisher Scientific |
Cat#PV4657 |
| LXR-b Recombinant Human Protein, Ligand Binding Domain, GST-Tagged |
Thermo Fisher Scientific |
Cat#PV4660 |
| His-tagged PXR LBD |
This paper |
N/A |
| Unlabeled SRC-1 Peptide: N-CPSSHSSLTERHKILHRLLQEGSPS-C |
This paper |
N/A |
| Critical commercial assays |
|
|
| CellTiter-Glo Luminescent Cell Viability Assay |
Promega |
Cat#G7572 |
| steadylite plus Reporter Gene Assay System |
PerkinElmer |
Cat#6066751 |
| LiveBLAzer FRET-B/G Loading Kit with CCF4-AM |
Thermo Fisher Scientific |
Cat#K1096 |
| Maxwell 16 LEV simplyRNA Tissue Kit |
Promega |
Cat#AS1280 |
| SuperScript VILO cDNA Synthesis Kit |
Thermo Fisher Scientific |
Cat#11754050 |
| TaqMan Fast Advanced Master Mix |
Thermo Fisher Scientific |
Cat#4444557 |
| TaqMan gene expression assay for CYP3A4
|
Thermo Fisher Scientific |
Cat#Hs00604506_m1 |
| TaqMan gene expression assay for ABCA1
|
Thermo Fisher Scientific |
Cat#Hs01059118_m1 |
| TaqMan gene expression assay for GAPDH
|
Thermo Fisher Scientific |
Cat#Hs03929097_g1 |
| TaqMan gene expression assay for RNA18S
|
Thermo Fisher Scientific |
Cat#Hs03928990_g1 |
| Deposited data |
|
|
| Crystal structure of PXR LBD bound to SJPYT-318 |
This paper |
PDB ID 8SZV |
| Experimental models: Cell lines |
|
|
| 293T/17 Cells |
ATCC |
Cat#CRL-11268 |
| GeneBLAzer LXRα-UAS-bla HEK 293T Cells |
Thermo Fisher Scientific |
Cat#K1692 |
| GeneBLAzer LXRβ-UAS-bla HEK 293T Cells |
Thermo Fisher Scientific |
Cat#K1699 |
| GeneBLAzer PPARδ-UAS-bla HEK 293T Cells |
Thermo Fisher Scientific |
Cat#K1690 |
| GeneBLAzer PPARγ-UAS-bla HEK 293H Cells |
Thermo Fisher Scientific |
Cat#K1701 |
| SNU-C4 Cells |
Korean Cell Line Bank |
Cat#0000C4 |
| SNU81 Cells |
Korean Cell Line Bank |
Cat#00081 |
| SNU719 Cells |
Korean Cell Line Bank |
Cat#00719 |
| LS1034 Cells |
ATCC |
Cat#CRL-2158 |
| SNU620 Cells |
Korean Cell Line Bank |
Cat#00620 |
| SW948 Cells |
ATCC |
Cat#CCL-237 |
| SW1417 Cells |
ATCC |
Cat#CCL-238 |
| SW1463 Cells |
ATCC |
Cat#CCL-234 |
| Oligonucleotides |
|
|
| 5’-TCTAGAGCGGCCGCAGGTACCAGTGAACGGACAGGGACTC-3’ |
Integrated DNA Technologies |
N/A |
| 5’-GGCCTTAGTTATTCAGGTACCTCAGCTACCTGTGATGCC-3’ |
Integrated DNA Technologies |
N/A |
| Recombinant DNA |
|
|
| pG5luc
|
Promega |
Cat#E2440 |
| pBIND |
Promega |
Cat#E2440 |
| pETDuet-1-PXR LBD-mSRC-1 |
Lin et al.32
|
N/A |
| pcDNA3-FLAG-PXR |
Lin et al.45
|
N/A |
| pBIND-PXR LBD |
This paper |
N/A |
| pBIND-FXR LBD |
This paper |
N/A |
| pBIND-RORγ LBD |
This paper |
N/A |
| Software and algorithms |
|
|
| XDS |
Kabsch48
|
https://xds.mr.mpg.de/
|
| Phenix |
Liebschner et al.52
|
https://phenix-online.org/
|
| Coot |
Emsley et al.51
|
http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
|
| PyMOL |
Schrödinger |
https://pymol.org/2/
|
| Prism 9 |
Graphpad Software |
https://www.graphpad.com/features
|