Table 4.

Summary statistics of the Illumina sequencing run after running the ‘stats’ function in HybPiper.

	Comp‐1061					Comp‐ParaLoss‐1272
Species	Reads mapped	% on target	Genes mapped	% genes retained	Paralog warnings	Reads mapped	% on target	Genes mapped	% genes retained	Paralog warnings
Emilia fosbergii	1,185,704	59%	1006	94.8%	95	11,236,129	65%	1259	99.0%	14
Packera aurea	5,184,671	53%	1016	95.8%	214	4,438,388	26%	1265	99.4%	9
Packera cana	1,532,039	21%	997	94.0%	130	8,297,634	35%	1268	99.7%	7
Packera candidissima	558,742	36%	999	94.2%	91	5,690,438	43%	1264	99.4%	5
Packera castoreus	1,654,718	37%	1043	98.3%	347	2,912,785	32%	1260	99.1%	2
Packera crocata	2,361,884	36%	1021	96.2%	265	10,762,526	35%	1267	99.6%	11
Packera cynthioides	1,171,793	29%	1007	94.9%	150	2,064,556	36%	1258	98.9%	4
Packera dubia	4,514,739	39%	1016	95.8%	233	2,775,445	26%	1266	99.5%	5
Packera franciscana	1,573,692	41%	992	93.5%	256	9,169,648	45%	1264	99.4%	7
Packera glabella	1,972,057	34%	1029	97.0%	256	6,012,371	31%	1266	99.5%	10
Packera greenei	2,024,706	34%	1013	95.5%	250	4,102,840	27%	1259	99.0%	8
Packera layneae	2,814,096	35%	1048	98.8%	394	8,240,509	26%	1268	99.7%	8
Packera loratifolia	511,859	43%	1001	94.3%	53	2,435,806	35%	1262	99.2%	0
Packera musiniensis	68,064	9%	923	87.0%	35	6,518,518	44%	1254	98.6%	9
Packera porteri	1,510,836	39%	1018	95.9%	193	5,896,137	40%	1268	99.7%	6
Packera pseudaurea	3,914,039	41%	1027	96.8%	309	7,423,481	41%	1264	99.4%	13
Packera streptanthifolia	2,695,188	38%	1026	96.7%	309	23,885,890	39%	1271	99.9%	14
Packera texensis	2,516,755	33%	1008	95.0%	238	9,026,502	38%	1266	99.5%	12
Roldana gilgii	1,545,552	28%	1051	99.1%	407	2,105,459	34%	1266	99.5%	11