Table 2.
Select tagging AGXT2 SNPs and pairwise linkage disequilibrium of AGXT2 polymorphisms
(A) Main characteristics of the select tagging AGXT2 SNPs in control subjects | ||||
---|---|---|---|---|
AGXT2 SNP (major/minor allele) | Localization | HWE p value | MAF | Genotyping rate (%) |
rs37370 (T/C) | Exon 3 (S102N) | 0.18 | G (0.45) | 99.8 |
rs37369 (T/C) | Exon 4 (V140I) | 0.01 | C (0.36) | 100 |
rs180749 (A/G) | Exon 6 (T212I) | 0.29 | G (0.21) | 100 |
rs16899974 (C/A) | Exon 14 (V498L) | 0.13 | A (0.47) | 99.95 |
(B) Pairwise linkage disequilibrium of AGXT2 polymorphisms (r2 below and D′ above the diagonal) | |||
---|---|---|---|
rs37370 | rs180749 | rs16899974 | |
rs37370 | 0.79 | 0.29 | |
rs180749 | 0.13 | 0.37 | |
rs16899974 | 0.08 | 0.03 |
MAF minor allele frequency
Two-sided P values less than 0.05 were considered statistically significant.