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Caudoviricetes phages spread opportunistically in the microbiome of failing queens. The coverage of phage vOTUs (dots, with a coverage >1) is shown for each queen sample, which was higher in failing queens (Wilcoxon rank test, P = 0.0297; PA, P = 0.032; BC, P = 5.12e−5). The color of the dot indicates the host where its genome is integrated or its putative host.
