Table 2. Numbers of functional and nonfunctional OR genes belonging to different groups in six species.
Zebrafish
|
Pufferfish
|
X. tropicalis
|
Chicken
|
Mouse†
|
Human†
|
|||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Group* | Funct | Total | Funct | Total | Funct | Total | Funct | Total | Funct | Total | Funct | Total |
α (I) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 2 (0.5) | 6 (0.7) | 9 (11.0) | 14 (2.5) | 115 (11.1) | 163 (11.7) | 57 (14.7) | 102 (12.7) |
β (I) | 1 (1.0) | 2 (1.5) | 1 (2.3) | 1 (1.0) | 5 (1.2) | 19 (2.1) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) |
γ (II) | 1 (1.0) | 1 (0.7) | 0 (0.0) | 0 (0.0) | 370 (90.2) | 802 (90.3) | 72 (87.8) | 543 (97.3) | 922 (88.9) | 1,228 (88.3) | 331 (85.3) | 700 (87.3) |
δ (I) | 44 (43.1) | 55 (40.1) | 28 (63.6) | 61 (62.2) | 22 (5.4) | 36 (4.1) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) |
ε (I) | 11 (10.8) | 14 (10.2) | 2 (4.5) | 2 (2.0) | 6 (1.5) | 17 (1.9) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) |
ζ (I) | 27 (26.5) | 40 (29.2) | 6 (13.6) | 8 (8.2) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) |
η | 16 (15.7) | 23 (16.8) | 5 (11.4) | 24 (24.5) | 3 (0.7) | 6 (0.7) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) |
Θ | 1 (1.0) | 1 (0.7) | 1 (2.3) | 1 (1.0) | 1 (0.2) | 1 (0.1) | 1 (1.2) | 1 (0.2) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) |
κ | 1 (1.0) | 1 (0.7) | 1 (2.3) | 1 (1.0) | 1 (0.2) | 1 (0.1) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) |
Total | 102 (100.0) | 137 (100.0) | 44 (100.0) | 98 (100.0) | 410 (100.0) | 888 (100.0) | 82 (100.0) | 558 (100.0) | 1,037 (100.0) | 1,391 (100.0) | 388 (100.0) | 802 (100.0) |
The numbers in parentheses represent the percentage of genes for each group. Funct, functional genes; Total, total number of genes including functional genes, pseudogenes, and partial sequences.
(I) and (II) indicate class I and II, respectively, in the currently accepted classification of vertebrate OR genes. Groups η, Θ, and κ were newly identified in this study and therefore are neither class I nor class II.
The data for humans and mice were obtained from refs. 5 and 9, respectively.