Table 2.
Source datasets of the combined training resource
Dataset | Plates | Fields of view | Treatment Type | Treatments | Queries | Ground truth | Purpose | Reference |
---|---|---|---|---|---|---|---|---|
LINCS | 136 | 23,094 | Compounds | 129 | N/A | N/A | Training only | Way et al.7 |
BBBC043 | 16 | 7,992 | Gene ORFs | 50 | N/A | N/A | Training only | Caicedo et al.10 |
BBBC036 | 55 | 122,022 | Compounds | 1550 | 1,365 | Mechanism of action | Training and evaluation | Bray et al.38 |
BBBC022 | 20 | 66,558 | Compounds | 995 | 849 | Mechanism of action | Training and evaluation | Gustafsdottir et al.37 |
BBBC037 | 5 | 17,254 | Gene ORFs | 205 | 204 | Genetic pathway | Training and evaluation | Rohban et al.36 |