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. 2023 Dec 18;43(1):112–131. doi: 10.1038/s44318-023-00007-y

Figure 1. A comparison of intact allelic LINE-1 pairs across two haploid genome assemblies.

Figure 1

(A) A comparison of the intact LINE-1s in two nearly homozygous genomes (CHM1, top/red, and CHM13, bottom/blue) based on liftover found 102 shared intact LINE-1s (light purple shaded area). Of the LINE-1s that are intact in only one genome, some are present but not intact in the other genome (light red and light blue shaded areas), and some are absent in the other genome. (B) Distribution of nucleotide (top) and non-synonymous (bottom) changes between CHM1 and CHM13 of the 102 allelic intact LINE-1s ordered by nucleotide differences. NT nucleotide, AA amino acid.