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. 2022 Jul 1;8(26):eabn3868. doi: 10.1126/sciadv.abn3868

Table 2. Summary of diffraction data and structure refinement statistics.

SAM-bound SAH-bound Apo (V66W/E67P)
Diffraction data
Wavelength (Å) 0.9793 0.9792 0.9792
Space group P1 P1 I23
Cell parameters
a (Å) 50.27 49.93 168.49
b (Å) 64.10 63.99 168.49
c (Å) 79.27 80.27 168.49
α (°) 90.10 90.26 90
β (°) 93.27 93.38 90
γ (°) 96.61 96.79 90
Resolution (Å) 43.32–2.10 49.49–2.09 37.68–3.55
(2.15–2.10)* (2.14–2.09) (3.68–3.55)
Observed reflections 213,131 108,874 59,066
Unique reflections (I/σ(I) > 0) 51,008 54,989 9792
Average redundancy 4.2 (4.2) 2.0 (2.0) 6.0 (6.3)
Average I/σ(I) 9.5 (1.8) 6.1 (1.7) 7.9 (1.5)
Completeness (%) 88.5 (59.6) 94.8 (78.5) 99.8 (100.0)
Rmerge (%) 12.7 (84.1) 10.5 (54.0) 16.8 (81.3)
CC1/2 0.995 (0.602) 0.993 (0.678) 0.992 (0.686)
Refinement and structure model
Reflections [Fo ≥ 0σ(Fo)]
Working set 48,879 52,979 9236
Test set 2,018 1,995 485
Rwork/Rfree (%) 18.8 / 23.9 16.6 / 20.7 22.5/27.4
No. of protein atoms 7,005 7,176 3843
No. of ligand atoms 108 104
No. of water atoms 427 598
Average B factor (Å2)
All atoms 29.6 26.5 93.2
Protein 29.4 26.0 93.2
Ligand 22.9 16.3
Water 31.1 32.1
RMSD
Bond lengths (Å) 0.008 0.007 0.008
Bond angles (°) 1.0 0.9 1.2
Ramachandran plot (%)
Favored 96.8 97.6 94.3
Allowed 3.2 2.4 5.7
Disallowed 0.0 0.0 0.0

*Numbers in parentheses refer to the highest-resolution shell.

Rmerge = ∑hkli|Ii(hkl)i − 〈I(hkl)〉|/∑hkliIi(hkl).

R factor = ||Fo| − |Fc||/|Fo|.