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. 2024 Feb 22;19(2):e0298883. doi: 10.1371/journal.pone.0298883

Genetic changes and testing associated with childhood glaucoma: A systematic review

Anika Kumar 1, Ying Han 1, Julius T Oatts 1,*
Editor: Petros C Cyrus Kayange2
PMCID: PMC10883561  PMID: 38386645

Abstract

Many forms of childhood glaucoma have been associated with underlying genetic changes, and variants in many genes have been described. Currently, testing is variable as there are no widely accepted guidelines for testing. This systematic review aimed to summarize the literature describing genetic changes and testing practices in childhood glaucoma. This systematic review was conducted in accordance with the Preferred Reporting Items for Systematic review and Meta-Analyses (PRISMA) 2020 guidelines and registered with Prospero (ID CRD42023400467). A comprehensive review of Pubmed, Embase, and Cochrane databases was performed from inception through March 2, 2023 using the search terms: (glaucoma) AND (pediatric OR childhood OR congenital OR child OR infant OR infantile) AND (gene OR genetic OR genotype OR locus OR genomic OR mutation OR variant OR test OR screen OR panel). Information was extracted regarding genetic variants including genotype-phenotype correlation. Risk of bias was assessed using the Newcastle-Ottawa Scale. Of 1,916 records screened, 196 studies met inclusion criteria and 53 genes were discussed. Among study populations, mean age±SD at glaucoma diagnosis was 8.94±9.54 years and 50.4% were male. The most common gene discussed was CYP1B1, evaluated in 109 (55.6%) studies. CYP1B1 variants were associated with region and population-specific prevalence ranging from 5% to 86% among those with primary congenital glaucoma. MYOC variants were discussed in 31 (15.8%) studies with prevalence up to 36% among patients with juvenile open angle glaucoma. FOXC1 variants were discussed in 25 (12.8%) studies, which demonstrated phenotypic severity dependent on degree of gene expression and type of mutation. Overall risk of bias was low; the most common domains of bias were selection and comparability. Numerous genes and genetic changes have been associated with childhood glaucoma. Understanding the most common genes as well as potential genotype-phenotype correlation has the potential to improve diagnostic and prognostic outcomes for children with glaucoma.

Introduction

Glaucoma in children is a rare but potentially visually devastating condition characterized by elevated intraocular pressure, optic nerve damage, and the potential to cause irreversible blindness if not diagnosed and treated in a timely manner [1]. Childhood glaucoma is typically diagnosed clinically on the basis of intraocular pressure elevation, signs of glaucomatous optic nerve damage, corneal changes, or visual field defects consistent with glaucomatous optic nerve damage [2]. In some cases, genetic testing can establish a molecular diagnosis as many forms of childhood glaucoma, including primary congenital glaucoma (PCG), juvenile open angle glaucoma (JOAG), and glaucoma associated with non-acquired ocular or systemic diseases, have been associated with underlying genetic changes [3]. Understanding these genetic changes has the potential to shed light on pathophysiologic mechanisms of disease, disease prognostication, and treatment implications.

Currently, various clinical practice guidelines recommend that children at high risk of developing glaucoma should undergo an eye examination to detect disease [46]. Even though many genes have been implicated in the childhood glaucoma [79], no current guidelines outline specific protocols for populations who may be genetically “at increased risk.” Additionally, for children with a confirmed diagnosis of glaucoma, the frequency and type of genetic testing is variable. This may be driven by the relative nascency of childhood glaucoma genetics that has not yet resulted in enough centralized high quality evidence to influence standard clinical practice, or the fact that genetic testing associated with childhood glaucoma can be inconsistent or inconclusive [10, 11]. This study summarizes the current body of evidence evaluating genetic changes and testing associated with childhood glaucoma.

Materials and methods

Inclusion and exclusion criteria

Studies were included in the systematic review if (1) they were prospective or retrospective cohort studies, cross-sectional studies, case-control studies, case series, or case reports, and (2) they specifically discussed genetic changes or testing associated with primary congenital glaucoma, juvenile-onset open angle glaucoma, secondary glaucoma associated with congenital non-acquired ocular anomalies, or unspecified glaucoma with age of onset between 0–18 years. Articles were excluded if (1) they were review articles, letters, or abstract-only publications (2) they discussed genetic changes or testing related to syndromic glaucoma with systemic features, (3) they lacked a child-specific analysis or discussion, or (4) they were not available as full-text articles in English.

Search strategy

To ensure a comprehensive review of the available literature, Pubmed, Embase, and Cochrane databases were all queried using the following search terms: (glaucoma) AND (pediatric OR childhood OR congenital OR child OR infant OR infantile) AND (gene OR genetic OR genotype OR locus OR genomic OR mutation OR variant OR test OR screen OR panel). Additionally, relevant citations from papers identified through these databases were manually identified. All relevant studies published on or before March 2, 2023 were included.

Study selection and data collection

After searching the databases, all titles and abstracts were screened by a single reviewer (AK) to exclude irrelevant studies. Full text review was subsequently conducted in accordance with the aforementioned inclusion and exclusion criteria. Data was then extracted for all studies that met criteria by a single reviewer (AK). Data extracted included year of study, study design, sample size, mean age and sex breakdown of study population, etiology of glaucoma included in study, genes or genetic tests studied, specific genetic changes identified, and any quantitative measures reported in the study, such as diagnostic yield, prevalence of genetic changes, and genotype-phenotype correlations. An independent validation of both the screening and data extraction process on a random 20% sample was conducted by a second reviewer (JO).

Risk of bias assessment

A risk of bias assessment was then performed independently using the Newcastle-Ottawa Scale tool for cohort and case-control studies [12], as well as modified instruments for cross-sectional studies [13] and case reports and series [14], by two investigators (AK and JO). Disagreements were adjudicated by a third party (YH).

Data synthesis and analysis

Results across studies were summarized using Microsoft Excel Version 16.0 (Redmond, WA) to provide descriptive statistics, including means and standard deviations of study population sizes and ages. This study did not require review by the Institutional Review Board because no patient data were included. This systematic review was conducted in accordance with the Preferred Reporting Items for Systematic review and Meta-Analyses (PRISMA) 2020 updated guidelines for reporting systematic reviews [15]. PRISMA checklist in S1 Checklist, Additionally, the methodological protocol of the search was registered with Prospero in February 2023 (ID CRD42023400467). Protocol in S1 Protocol.

Study characteristics

Systematic search of the Pubmed, Embase, and Cochrane databases resulted in the identification of 2,349 studies published as of March 2, 2023. Following the removal of duplicates, 1,916 articles remained (Fig 1). Following exclusion of 1,255 of those studies based on screening of abstracts and titles alone, the remaining 661 studies underwent full-text review. Of those, 305 were excluded on the basis of relevance, 70 were excluded for being non-pediatric studies, 72 were excluded on the basis of study design, and 18 were excluded for not being available as full-texts in English. Following this assessment for eligibility, 196 studies were eligible for inclusion in the systematic review. A complete spreadsheet containing all data fields extracted from included studies can be found in S1 Appendix.

Fig 1. PRISMA flow diagram.

Fig 1

Of the 196 included studies, 36 (18.4%) were case reports, 40 (20.4%) were case series, 15 (7.7%) were case-control studies, 91 (66.9%) were cross-sectional studies, 7 (3.6%) were prospective cohort studies, and 7 (3.6%) were retrospective cohort studies. Twenty-three of the studies (11.7%) were published between 1993 and 2002, 58 (29.6%) between 2003 and 2012, and 115 (58.7%) between 2013 and March 2023. Within the studies, 53 unique genes were discussed. The most common gene discussed in the studies was CYP1B1, evaluated in 109 (55.6%) of the studies, followed by MYOC in 31 (15.8%), and FOXC1 in 25 (12.8%). Of the included studies that were not case reports, mean±SD number of study participants was 80.3±139.4 participants. The total number of participants included across all 196 studies was 12,607. Of the studies that published data on participant age, mean age±SD at glaucoma diagnosis was 8.94±9.54 years. Of the studies that published data on participant sex, an average of 50.4% were male. A comprehensive list of all genes, proposed functions, and glaucoma associations is shown in Table 1.

Table 1. Nuclear genes associated with childhood glaucoma in published literature.

Gene Protein Relevant proposed function/expression of gene Glaucoma types associated with gene
ADAM9 a disintegrin and metalloprotease metallopeptidase domain 9 Involved in cell-cell and cell-matrix interactions involved in neurogenesis PCG [16]
ARX aristaless related homeobox Involved in central nervous system development PCG [17]
ANGPT1 angiopoietin 1 Mediates matrix-endothelium interactions and is involved in vascular development PCG, JOAG [18]
BEST1 bestrophin 1 Regulates ion transport in the retina Angle-closure [19]
CHRDL1 chordin like 1 Regulates retinal angiogenesis in response to hypoxia PCG [20]
COL1A1, COL18A1, COL2A1 collagen type I alpha 1 chain, collagen type XVIII alpha 1 chain, collagen type II alpha 1 chain Encodes fibrillar collagen found in cartilage and vitreous humor or eye PCG [18], JOAG [18]
CPAMD8 C3 and PZP like alpha-2-macroglobulin domain containing 8 Involved in innate immunity and damage control PCG, JOAG [2123], glaucoma associated with non-acquired ocular anomalies [18]
CRYBB3 crystallin beta B3 Involved in maintaining the vertebrate eye lens PCG [24], JOAG, glaucoma associated with non-acquired ocular anomalies [25]
CYP1B1 cytochrome P450 family 1 subfamily B member 1 Involved in metabolizing a signaling molecule involved in eye development PCG [18, 20, 24, 26121], JOAG [9, 122127], glaucoma associated with non-acquired ocular anomalies [25, 128]
DPT dermatopontin Involved in extracellular matrix formation and cell-matrix interactions PCG [129]
EFEMP1 EGF containing fibulin extracellular matrix protein 1 Encodes extracellular matrix glycoprotein involved in retinal drusen formation JOAG [130]
FBN1 fibrillin 1 Encodes extracellular matrix protein expressed in the eye PCG [131]
FOXC1 forkhead box C1 Regulates embryonic and ocular development and ocular drainage PCG [24, 48, 72, 117, 129, 132146], JOAG [18, 25, 128, 147], glaucoma associated with non-acquired ocular anomalies [148]
FYCO1 FYVE and coiled-coil domain autophagy adaptor 1 Mediates autophagy and expressed in the lens and retina PCG [24]
GJA1, GJA8 gap junction protein alpha 1, gap junction protein alpha 8 Encodes connexin protein necessary for lens fiber growth and maturation PCG [24, 117, 149], glaucoma associated with non-acquired ocular anomalies [25]
HMX1 H6 family homeobox 1 Involved in development of craniofacial structures PCG [131]
LMX1B LIM homeobox transcription factor 1 beta Involved in development of the anterior segment of the eye PCG [131]
LTBP2 latent transforming growth factor beta binding protein 2 Involved in ciliary microfibril development and lens suspension PCG [24, 44, 68, 71, 82, 150154], JOAG [123, 155], glaucoma associated with non-acquired ocular anomalies [25]
MAF MAF bZIP transcription factor Regulates embryonic lens fiber cell development PCG [131]
MYOC Myocilin, or trabecular meshwork glucocorticoid-inducible response (TIGR) Involved in IOP regulation and expressed in ocular tissue PCG [5355, 68, 72, 7476, 90, 156159], JOAG [9, 118, 122, 123, 155, 160172], glaucoma associated with non-acquired ocular anomalies [18]
OAT ornithine aminotransferase Involved in glutamate and GABA synthesis Glaucoma associated with non-acquired ocular anomalies [173]
OPA1 Optic atrophy type 1 mitochondrial dynamin like GTPase Involved in mitochondrial metabolism in retinal ganglion cells PCG, JOAG [166]
OPTN Optineurin Regulates basic cellular functions within trabecular meshwork and retina PCG [18, 174], JOAG [164]
NTF4 neurotrophin 4 Regulates survival and differentiation of mammalian neurons PCG [90]
PAX6 paired box 6 Provides transcriptional regulation of neural development, especially in the eye PCG [175181], JOAG [18, 182]
PITX2, PITX3 paired like homeodomain 2, paired like homeodomain 3 Regulates development of the anterior segment of the eye PCG [17, 72, 117, 131, 140, 144, 183], JOAG [9, 147], glaucoma associated with non-acquired ocular anomalies [18, 148, 184]
PLOD2 procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 Involved in membrane stability and expressed in the eye during embryogenesis PCG [185]
PRDM5 PR/SET domain 5 Regulates fibrillar collagens in the eye PCG [131]
PTBP2 polypyrimidine tract binding protein 2 Regulates neural development via repression of select adult protein isoforms until final maturation PCG, JOAG [18]
PXDN Peroxidasin Involved in extracellular matrix formation and is expressed in the eye PCG [150]
RAX retina and anterior neural fold homeobox Regulates retinal cell fate determination and ocular development PCG [131]
SIX1, SIX6 SIX homeobox 1, SIX homeobox 6 Involved in ocular development PCG [131]
SLC4A11 solute carrier family 4 member 11 Encodes ion channel expressed in corneal endothelium PCG [131], JOAG [18]
SOX11 SRY-box transcription factor 11 Regulates embryonic development and cell fate determination of ocular structures PCG [24, 131], glaucoma associated with non-acquired ocular anomalies [25]
SVEP1 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 Involved in epidermis development and lymph vessel morphogenesis PCG [186]
TBK1 TANK binding kinase 1 Regulates autophagy in the retinal ganglion cell layer PCG, JOAG [18]
TEK TEK receptor tyrosine kinase mediates embryonic vascular development through angiopoietin signaling PCG [24, 37, 71, 186, 187], JOAG [18], glaucoma associated with non-acquired ocular anomalies [25]
THBS1 thrombospondin 1 Mediates cell-cell and cell-matrix interactions on ocular tissue PCG [188]
TMEM98 transmembrane protein 98 Expressed in ocular tissues and regulates eye size PCG, JOAG [18]
TNF tumor necrosis factor Involved in multifunctional inflammatory cytokine pathway PCG [189]
TRIM44 tripartite motif containing 44 Regulates differentiation and maturation of neuronal cells PCG [131]
WDR36 WD repeat domain 36 Involved in ocular tissue cell cycle progression, signal transduction, apoptosis, and gene regulation PCG [90], JOAG [166]
WT1 WT1 transcription factor Regulates progenitor proliferation and retinal ganglion cells during retinogenesis PCG [131]
VAX1 ventral anterior homeobox 1 Regulates development and morphogenesis of anterior ventral forebrain and visual system PCG [131]

Overall, risk of bias was low among included studies. Of the case reports and series, 80% scored a 4 or higher out of 5 on the modified Newcastle-Ottawa scale for case series and reports, with the most common domain for bias being selection. Of the case-control studies, 70% scored a 6 or higher out of 9 on the Newcastle-Ottawa scale for case-control studies, with the most common domain for bias being comparability between cases and controls. Of the cross-sectional studies, 70% scored an 8 or higher out of 10 on the modified Newcastle-Ottawa scale for cross-sectional studies, with the most common domain for bias being comparability between different outcome groups. Of the cohort studies, 100% scored a 6 or higher out of 9 on the Newcastle-Ottawa scale for cohort studies, with the most common domain of bias being selection.

Limitations

This systematic review is limited in that reported summary estimates may have been subject to publication bias; it is possible that reported metrics, such as diagnostic yield or magnitude of genotype-phenotype correlations, may be overestimates of true estimates due to the tendency for positive findings to be overrepresented in the literature. Additionally, this review only included studies that had full text available in the English language, which may have resulted in incomplete summarizations of genetic changes and prevalence estimates by omitting studies in other languages conducted in globally diverse patient populations. Finally, though a comprehensive search strategy was implemented, it is possible that some relevant studies were not included due to variations in terminology or our use of only three major databases.

Discussion/Summary of evidence

CYP1B1

The CYP1B1 gene, which encodes a cytochrome P450 family protein and is highly expressed in the eye, is arguably one of the most investigated genomic regions in the setting of childhood glaucoma. In PCG, CYP1B1 variants are thought to be related to impaired metabolism of retinol, which disrupts retinoic acid levels required for ocular development [43]. Its increased expression in fetal eyes as compared to adult eyes suggests its significance in the development of childhood glaucoma specifically [190]. Numerous case reports have highlighted the incidence of bilateral PCG in those with homozygous or compound heterozygous CYP1B1 variants in individuals both with and without a family history of the disease, with the most common variants being p.G61E, p.R368H, pE229K, and p.R390H [2636].

Of analytical studies investigating the prevalence of genetic changes associated with childhood glaucoma, CYP1B1 variants are the most common with varying prevalence across regions and populations. For example, among patients with PCG, cross-sectional studies have found the prevalence of CYP1B1 variants to range between 5% and 23% in South Africa [71], China [46, 62], America [68], Vietnam [54], Japan [69, 94, 104, 107], and Germany [24], while prevalences range from 30% to 55% in studies from India [79, 95], Turkey [72, 98], Portugal [57, 128], Morocco [40], Spain [118], and France [103]. Among PCG patients, CYP1B1 variants appear to be most prevalent in some South Asian and Middle Eastern populations as prevalences have been found to range from 64% to 85.7% in studies from Pakistan [99], Iran [63], and Saudi Arabia [47, 113, 123]. Prevalence of specific variants has also been found to be region- and population-specific. For example, among PCG patients, the prevalence of the missense p.G61E variant was found to be 7.8% in a Moroccan population [114], 47.1% in an Iranian population [119], 50% in an Israeli Bedouin population [49], and 63% in a Saudi Arabian population [66]. Additionally, while the frequency of the missense p.E378K variant was only 6.67% in a Mexican population [50], it was 100% in a Slovak population of patients with PCG, indicating a potential founder effect [77]. Studies have also evaluated the prevalence of CYP1B1 variants in patients with various ocular anomalies. For example, the prevalence was found to be as high as 91% in patients with buphthalmos, including ectropion uveae and partial aniridia [87], 92.3% in patients with ectropion uveae [100], and 0% in patients with the Axenfeld-Rieger anomaly [117]. Together, this research highlights the relative prevalence of CYP1B1 variants among cases of childhood glaucoma and also suggests that testing for such variants has varying degrees of utility depending on the patient population and ocular manifestations.

In evaluating genotype-phenotype correlations, studies have shown that those with homozygous CYP1B1 variants generally display more severe clinical phenotypes compared to those without. For example, variants in CYP1B1 have been associated with earlier age of disease onset [57, 75, 106, 191], higher likelihood of developing bilateral disease [57, 64, 75], higher intraocular pressure [64, 106], and requirement of more medical and surgical interventions [58, 75, 113]. However, among patients with CYP1B1 genetic changes, penetrance is not full, and phenotypic severity has been found to be variable, suggesting the presence of some type of genetic modification through interaction with other genes [89]. Several studies have explored whether the type of CYP1B1 variant affects the phenotype. For example, in West Siberia, variants in codon 444 were associated with the most severe phenotypes, suggesting that codon’s role in structural stabilization of the resulting protein [115]. Additionally, null variants have been found to be associated with a need for greater number of surgeries and earlier age of disease onset [33, 67]. In another study, the percentage of PCG patients with “severe” phenotypes was 100% in those with frameshift variants, 80% with missense p.E229K variants, and 66.7% with missense p.G61E variants [52]. However, in some familial studies, phenotypes of different degrees of severity have been observed among patients with the exact same variant, even within the same family, demonstrating that variant alone cannot account for all phenotypic differences [45, 121]. Overall, future studies investigating the effect of CYP1B1 variants in both functional protein models and human correlates will be essential in predicting disease course and phenotypic severity of those with variants.

FOXC1 and PITX2

The FOXC1 gene encodes the forkhead box C1 protein, which is a transcription factor foundational in the regulation of embryonic and ocular development and highly expressed in important ocular structures including the iris, cornea, and trabecular meshwork [192]. Many case reports have described a spectrum of conditions associated with variants in this gene, most commonly including the Axenfeld-Rieger anomaly, as well as aniridia and megalocornea in the setting of heterozygous FOXC1 variants [132136]. Frequently reported variants associated with varying degrees of phenotypic severity in case series include missense variants of the arginine residue at position 127 [129, 138, 146], deletions [48, 137, 142], and duplications [139]. Among cross-sectional studies in German, Australian, Italian, and Spanish populations of patients with PCG and glaucoma associated with non-acquired ocular anomalies, the prevalence of FOXC1 variants appears to range between 4% and 7.5% [24, 25, 143145]. Through functional protein analysis, it has been proposed that a dose-dependent relationship exists between FOXC1 expression and phenotype where variants that result in 50–60% or 130–150% of transcriptional activity are associated with glaucoma, and activity beyond these levels result in more severe anterior segment anomalies and extraocular manifestations [141]. For example, in one study of Swiss families, it was found that those with duplications with hypothesized 150% transcriptional activity exhibited glaucoma with less phenotypic severity than those with a frameshift FOXC1 variants that resulted in little to no transcriptional activity [128]. Overall, these studies demonstrate a significant amount of phenotypic heterogeneity associated with relatively prevalent changes in FOXC1 and future research is required to delineate the hypomorphic and hypermorphic variants associated with the most severe phenotypes.

Of note, the FOXC1 gene has significant functional interactions with the PITX2 gene, another gene implicated in childhood glaucoma [193]. The PITX2 gene encodes the paired-like homeodomain 2 protein, a transcription factor involved in negative regulation of the FOXC1 gene. Loss of function PITX2 variants result in inappropriately extensive activation of FOXC1-target genes [194]. Thus, variants in PITX2 have been reported in glaucoma associated with Axenfeld-Rieger syndrome even in the absence of FOXC1 variants [17, 184]. Though FOXC1 and PITX2 variants are thought to cause childhood glaucoma through a similar mechanism, studies have shown that FOXC1 variants (as compared to PITX2 variants) have significantly greater disease penetrance and earlier age of onset [147, 148]. However, one study observed that despite increased prevalence of disease at age 10 in those with FOXC1 variants as compared to PITX2 variants, difference in prevalence was no longer significant at age 25 [140]. Additionally, FOXC1 variants are potentially more likely to be associated with corneal abnormalities and need for glaucoma surgery than PITX2 variants [148]. Overall, these studies highlight that identification of causative genes in patients with Axenfeld-Rieger syndrome may have implications in anticipating phenotypic severity, disease progression, and surgical intervention requirements; future research is required to particularize these relationships with age.

LTBP2

The LTBP2 gene encodes the latent transforming growth factor beta binding protein 2, an extracellular matrix protein thought to be essential in ciliary microfibril development and the development of correct lens placement and suspension. It is located within 1.5 Mb from the GLC3 locus, which has been linked to PCG in family linkage studies [7]. LTBP2 variants have also been described in association with microspherophakia, megalocornea, and ectopia lentis: all non-acquired ocular anomalies that can co-exist with glaucoma. For example, reports have described compound heterozygous LTBP2 variants and the coexistence of LTBP2 variants in those with MYOC variants contributing to severe childhood glaucomatous phenotypes [155, 195]. Additionally, some familial observational case series have described missense and frameshift variants in Iranian and Pakistani pedigrees, noting that consanguinity was present in all studied families [150152]. The prevalence of LTBP2 variants in childhood glaucoma patients is population-specific. For example, no variants to date have been identified in cross-sectional studies of PCG and JOAG populations from China, South Africa, Saudi Arabia, or the United States [68, 71, 123, 153]. However, LTBP2 variants have been identified in 4–5.6% of study participants with childhood glaucoma in Germany [24, 25] and 12.5% in India [44]. Additionally, a single p.R299X variant has been identified in 40.5% of patients with PCG that all originated from the Roma founder population, with homozygotes for the variant presenting with more severe ocular phenotypes than heterozygotes [82]. Collectively, these findings suggest that the prevalence of causal LTBP2 variants may be region-specific, and that using LTBP2 sequencing for molecular diagnosis may not be productive in certain populations. Future research examining the association between LTBP2 variant prevalence and consanguinity in a variety of different locations will help elucidate populations in which LTBP2 testing may be the most valuable.

MYOC

The MYOC gene encodes the myocilin protein, also known as the trabecular meshwork glucocorticoid-inducible response (TIGR) protein, which in the eye is expressed primarily in trabecular meshwork tissue and thought to be an important contributor to the regulation of intraocular pressure [196]. Homozygous and heterozygous missense MYOC variants have been implicated in case reports and cases series of bilateral PCG and JOAG [156, 160] Some common variants identified include the missense p.P370L [163, 168, 169] and p.Q48H [157, 159] variants. Of note, the missense p.Q48H variant is thought to contribute to a consequential proportion of cases in India, with that variant alone found in 2.5% of PCG cases in an observational study in India [158]. In cross-sectional analyses, the prevalence of MYOC variants has been found to range between 2.3% and 2.6% in Chinese and Indian populations with PCG [53, 166]. The prevalence in patients with JOAG is higher and has been found to range between 4% and 36% among Iranian, Canadian, Spanish, American, and Chinese populations [9, 118, 122, 161, 166]. Additionally, a study of the age-based prevalence of MYOC variants found that MYOC variants were identified in 36% of American glaucomatous probands with juvenile-onset disease as compared to only 4% of probands with adult-onset disease [161]. Together, these studies demonstrate that screening for MYOC variants is of highest utility in patients with JOAG or members of families with history of early-onset glaucoma.

MYOC variants have also been found to have significant interactions with other genes implicated in childhood glaucoma. For example, one study found that patients with coexisting MYOC and OPTN variants had more severe ocular phenotypes than those with MYOC variants alone [164]. The OPTN gene codes for the optineurin protein, which is expressed during early stages of eye development and helps regulate cellular functions such as protein trafficking and NF-κB pathway maintenance in the trabecular meshwork and retina. Though this phenomenon has not been extensively characterized in humans, cellular studies have noted that OPTN upregulation results in increased stability of MYOC mRNA; thus, loss of function variants at the OPTN gene drive dysregulation of MYOC expression [197], providing a possible pathophysiological mechanism of their interaction. Another study found that those with concurrent MYOC and CYP1B1 variants had a much earlier age of onset of disease than those with MYOC variants alone [9]. One hypothesis for this interaction is that the CYP1B1 protein may be involved in metabolism of endogenous steroids, which are known to induce the myocilin protein; thus metabolic derangements from CYP1B1 variants may further exacerbate the ramifications of any mutant myocilin proteins [198, 199]. Overall, the role of multiple genes in potential modification of MYOC gene expression implies a common interaction pathway. Further studies of functional protein interactions and their resulting clinical manifestations will be useful in understanding the mechanisms by which MYOC variants contribute to glaucoma and which patients may be at risk for developing the most severe phenotypes.

TEK

The TEK gene encodes the tunica interna endothelial cell kinase, which is a tyrosine kinase protein that mediates embryonic vascular development through angiopoietin signaling [37]. Though its exact function in the development of glaucoma remains unknown, TEK variants are thought to impair aqueous humor outflow and Schlemm’s canal development [200]. Though no specific variants appear to be predominant among TEK variants described in the literature, estimates of the prevalence of TEK variants in general range from 4% to 5.9% among German, Chinese, Australian, and South African populations with PCG, JOAG, and glaucoma associated with non-acquired ocular anomalies [18, 24, 25, 71, 187]. Unlike other genetic changes associated with childhood glaucoma, studies have demonstrated that the phenotypic penetrance of TEK variants is relatively low. For example, in one study of TEK variants in Australian patients with early-onset glaucoma, only 75% of those with TEK variants exhibited bilateral glaucoma, as compared to at least 97% of those with CYP1B1, LTBP2, and MYOC variants, for example [18]. In another study of PCG in Chinese patients, penetrance was only 68.5% [187]. It is worth mentioning that these studies were limited in that they did not investigate the association between penetrance and type of variant in large sample sizes; thus, it is possible that a dose-dependent or protein-structure effect, or other relationship, exists between TEK gene expression and phenotype that has yet to be identified. Regardless, one possible explanation is that TEK gene expression is highly susceptible to the influence of interaction with other genes. For example, one study has proposed that the SVEP1 gene could be a potent genetic modifier as SVEP1 loss of function alleles were demonstrated to reduce TEK expression in vascular endothelial cells in animal models and correlate with increased disease severity in human families with PCG [186]. The SVEP1 gene encodes an extracellular matrix glycoprotein involved in epidermal and lymph vessel development. Another study identified the coexistence of heterozygous TEK and CYP1B1 variants in cases of PCG; they then conducted functional analyses demonstrating that recombinant CYP1B1 proteins interacted with recombinant TEK proteins to decrease TEK signaling [37]. Further studies evaluating modulators of this gene’s expressivity can help elucidate the pathophysiological mechanism by which it drives glaucoma and help predict which patients with TEK variants may be at greatest risk of severe disease.

Real world genetic testing practice

Though no standard guidelines exist regarding genetic testing for childhood glaucoma, several studies have investigated its use in the real world. For example, in a cross-sectional study of pediatric referral practices in India, patients with glaucoma and objective features suggesting an underlying genetic abnormality were less than half as likely to be referred for formal genetic evaluation when they met with ophthalmologists than when they met with geneticists [201]. Though these findings may not be generalizable to all provider practices, it suggests that in general, there is room to improve initiating genetic testing. One potential explanation for this may relate to providers’ hesitation around the utility of testing relative to the potential financial and logistical expenditures. A study investigating the diagnostic yield of genetic testing of early-onset glaucoma patients in a real world practice setting found that next generation sequencing was able to identify a causative variant in only 19% of those tested [202]. Notably, diagnostic yield was 32% in patients with glaucoma onset before 3 years of age but only 5% in patients with onset after three years of age, suggesting more limited utility of testing for later onset glaucoma. Additionally, in a study of 39 patients with PCG referred to a pediatric ocular genetics service in England, diagnostic yield of whole exome sequencing was only 12.8% [203]. In another study of 28 preschool-aged probands with anterior segment dysgenesis, including glaucoma, diagnostic yield was 39%. Additionally, it was found that establishing a molecular diagnosis altered management in 18% of those patients through avoidance of additional unnecessary tests and initiation of surveillance for other extraocular manifestations [204]. The lack of consistent recommendations for genetic testing may also relate to other practical barriers to incorporation of genetics assessments into clinical practice, including shortages of qualified ophthalmic genetic counselors, which can result in long wait times for patients to be evaluated [205]. Overall, while existing research demonstrates promising data on the utility of real world genetic testing, especially in patients with earlier onset glaucoma, future research on its capability to inform disease management is necessary to help shape provider practice patterns.

Conclusion

Numerous genes and genetic changes have been described in association with childhood glaucoma, with the most common being CYP1B1, MYOC, and FOXC1. There is significant variability in genotype-phenotype correlation based on the specific gene and variant identified. Studies of real world genetic testing reveal a relatively low diagnostic yield, which may limit the practicality of genetic testing with currently available tools. Understanding the underlying genetic changes associated with childhood glaucoma has the potential to improve diagnostic, prognostic, and potentially therapeutic outcomes for children with glaucoma.

Supporting information

S1 Checklist. Preferred Reporting Items for Systematic review and Meta-Analyses (PRISMA) checklist.

(PDF)

pone.0298883.s001.pdf (2.8MB, pdf)
S1 Protocol. Prospero protocol.

(PDF)

pone.0298883.s002.pdf (183.9KB, pdf)
S1 Appendix. Complete extracted characteristics from included studies.

(XLSX)

pone.0298883.s003.xlsx (56.2KB, xlsx)

Data Availability

All relevant data are within the manuscript and its Supporting Information files.

Funding Statement

JTO received funding from the National Eye Institute/National Institutes of Health (NEI/NIH K23EY034893, NEI/NIH EY002162 Core Grant for Vision Research, https://www.nei.nih.gov/). The funders did not play any role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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Decision Letter 0

Petros C Cyrus Kayange

17 Jan 2024

PONE-D-23-41816Genetic changes and testing associated with childhood glaucoma: a systematic reviewPLOS ONE

Dear Dr. Oatts,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

 

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[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

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Comments to the Author

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Reviewer #1: Yes

Reviewer #2: Yes

********** 

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: N/A

Reviewer #2: Yes

********** 

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Reviewer #1: No

Reviewer #2: Yes

********** 

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Reviewer #1: Yes

Reviewer #2: Yes

********** 

5. Review Comments to the Author

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Reviewer #1: In this study, Kumar et al have conducted a systematic review, summarizing the current body of evidence on the genetic changes and genetic testing associated with childhood glaucoma by reviewing 196 studies that met their inclusion criteria.

This is an important and relevant study that provides information on the various genetic variants associated with childhood glaucoma and insights to real world genetic testing practices. However I have some comments.

1. The authors should use line numbering to make it easier to evaluate the work

2. When was the literature search conducted and what time period was included in search of the database

3. The authors should include the data extraction form used for the study as well as the data that was analysed

4. Data presentation in Table 1 should be improved upon. The authors can include a column for studies/references

5. The total number of participants studied in the review have not been included. 

6. Authors have not mentioned the limitation of the study

Reviewer #2: 1. Page 12 of submission, Inclusion and exclusion criteria should read secondary glaucoma associated with ocular anomlies instead of primary glaucoma.

2. Page 19, sentence regarding reference 87 should mention that CYP1B1 positive patients were notable for partial aniridia and mild iris ectropion rather than a full blown phenotypic presentation of aniridia.

3. Page 23 last paragraph a brief explanation of OPTN is warranted as this is the first mention of the gene in the manuscript other than the table.

4. Page 25 same comment for SVEP1.

5. Page 25, last paragraph, the relative lack of geneticists and long wait time for genetic evaluation also plays a role in the lack of a consistent protocol for genetic testing for these patients along with the low yield and cost.

********** 

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Reviewer #1: No

Reviewer #2: No

**********

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PLoS One. 2024 Feb 22;19(2):e0298883. doi: 10.1371/journal.pone.0298883.r002

Author response to Decision Letter 0


24 Jan 2024

RESPONSE TO REVIEWERS

We thank the Editor and Reviewers for your thorough reviews and helpful comments on our manuscript, entitled, “Genetic changes and testing associated with childhood glaucoma: a systematic review” (PONE-D-23-41816). Your suggested revisions have strengthened our manuscript, and our responses to each comment are detailed below.

Editor

1. Comment: 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf.

Response: We thank the editor for these style requirement templates. We have incorporated a variety of formatting changes to adhere with all the style guidelines in the templates, including adding line numbering, re-formatting our title page, using the appropriate heading levels, and using brackets instead of parentheses for our in-text references.

2. Comment: 2. We note that your Data Availability Statement is currently as follows: [All relevant data are within the manuscript and its Supporting Information files.]

Please confirm at this time whether or not your submission contains all raw data required to replicate the results of your study. Authors must share the “minimal data set” for their submission. PLOS defines the minimal data set to consist of the data required to replicate all study findings reported in the article, as well as related metadata and methods (https://journals.plos.org/plosone/s/data-availability#loc-minimal-data-set-definition).

For example, authors should submit the following data:

- The values behind the means, standard deviations and other measures reported;

- The values used to build graphs;

- The points extracted from images for analysis.

Authors do not need to submit their entire data set if only a portion of the data was used in the reported study.

If your submission does not contain these data, please either upload them as Supporting Information files or deposit them to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. For a list of recommended repositories, please see https://journals.plos.org/plosone/s/recommended-repositories.

Response: We confirm that our submission contains all the raw data required to replicate the results of our study.

3. Comment: Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information.

Response: We have added captions for our 3 supporting files (S1 checklist, S2 protocol, and S3 appendix) at the end of our manuscript and appropriately updated the in-text citations (Line 122, 124, 135).

4. Comment: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice.

Response: We have reviewed our reference list to ensure that it is complete, correct, and appropriately formatted.

Reviewer #1

1. Comment: In this study, Kumar et al have conducted a systematic review, summarizing the current body of evidence on the genetic changes and genetic testing associated with childhood glaucoma by reviewing 196 studies that met their inclusion criteria.

This is an important and relevant study that provides information on the various genetic variants associated with childhood glaucoma and insights to real world genetic testing practices. However I have some comments.

Response: We appreciate the reviewer comments that this article is an important and relevant study. We have addressed your points below.

2. Comment: 1. The authors should use line numbering to make it easier to evaluate the work.

Response: We thank the reviewer for this suggestion for facilitating evaluation of this work. We have included continuous line numbering in the manuscript file.

3. Comment: When was the literature search conducted and what time period was included in search of the database

Response: We appreciate this comment as an opportunity to clarify our literature search timeline. We included all studies that met our search criteria published any time on or before March 2, 2023. Currently, the paper includes the following statement in our search strategy subsection of our methods section: “All relevant studies published on or before March 2, 2023 were included” (Line 97). To further emphasize this point, we have modified the first statement of our study characteristics section to read “Systematic search of the Pubmed, Embase, and Cochrane databases resulted in the identification of 2,349 studies published as of March 2, 2023” (Line 129).

4. Comment: The authors should include the data extraction form used for the study as well as the data that was analysed.

Response: Thank you for this comment. As recommended by the editor, we have now included our data extraction form as well as all collected data for the 196 studies as a supporting file. A reference to this is now included in our study characteristics section that reads: “A complete spreadsheet containing all data fields extracted from included studies can be found in S3 Appendix.” (Line 135-136)

5. Comment: Data presentation in Table 1 should be improved upon. The authors can include a column for studies/references

Response: Thank you for this suggestion. While we understand the logic behind adding a column with each reference, given the number of references, we chose not to do this, as it would make our table significantly longer (currently 2.5 pages – would increase to 4 pages). As an alternative, we have included the relevant references for each row as superscripts and have also provided all data we collected as a supporting file. We hope these changes capture the spirit of this comment to improve the readability of Table 1 without increasing its length significantly.

6. Comment: The total number of participants studied in the review have not been included.

Response: We thank the reviewer for this comment relating to the number of participants included in all studies. We have added the following line in our Study characteristics section to characterize the average study population size among studies included in the review and total number of individuals encompassed by the studies in the review: “Of the included studies that were not case reports, mean±SD number of study participants was 80.3±139.4 participants. The total number of participants included across all 196 studies was 12,607.,” (Line 144-147).

7. Comment: Authors have not mentioned the limitation of the study

Response: We thank the reviewer for this opportunity to discuss the limitations of this review—while we alluded to some limitations throughout the text, we did not have an explicit limitations section in our manuscript. To address this, we have added a limitations sub-section in our Study characteristics section discussing publication bias, our use of only studies published in English, and limitations of our search strategy. (Line 162-171).

Reviewer #2

1. Comment: Page 12 of submission, Inclusion and exclusion criteria should read secondary glaucoma associated with ocular anomlies instead of primary glaucoma.

Response: We thank the Reviewer for this clarification of terminology and agree with this change. We have modified our inclusion criteria to now read, “secondary glaucoma associated with congenital non-acquired ocular anomalies.” (Line 85)

2. Comment: Page 19, sentence regarding reference 87 should mention that CYP1B1 positive patients were notable for partial aniridia and mild iris ectropion rather than a full blown phenotypic presentation of aniridia.

Response: We thank the reviewer for highlighting this nuance related to the study population corresponding to reference 87. We have modified our description of the results from that study to more accurately reflect the patients evaluated. The statement now reads, “For example, the prevalence was found to be as high as 91% in patients with buphthalmos, including ectropion uveae and partial aniridia[87],” (Line 202).

3. Comment: Page 23 last paragraph a brief explanation of OPTN is warranted as this is the first mention of the gene in the manuscript other than the table.

Response: We thank the reviewer for highlighting an opportunity to strengthen our description of the OPTN gene and agree that a short explanation of the gene would be helpful in this section. We have included the following statement in our MYOC subsection: “The OPTN gene codes for the optineurin protein, which is expressed during early stages of eye development and helps regulate cellular functions such as protein trafficking and NF-κB pathway maintenance in the trabecular meshwork and retina,” (Line 313-315).

4. Comment: Page 25 same comment for SVEP1.

Response: Similar to the previous comment, we agree a short description of the SVEP1 gene would be helpful in the TEK subsection. We included the following statement, “The SVEP1 gene encodes an extracellular matrix glycoprotein involved in epidermal and lymph vessel development,” (Line 352-353).

5. Comment: Page 25, last paragraph, the relative lack of geneticists and long wait time for genetic evaluation also plays a role in the lack of a consistent protocol for genetic testing for these patients along with the low yield and cost.

Response: We thank the reviewer for this important comment regarding potential explanations for the lack of consistent genetic testing recommendations, and appreciate the opportunity to additionally include discussion of practical barriers to implementation of widespread genetic testing. To comment on these issues, we have added the following statement and an accompanying reference to our real-world genetic testing section: “The lack of consistent recommendations for genetic testing may also relate to other practical barriers to incorporation of genetics assessments into clinical practice, including shortages of qualified ophthalmic genetic counselors, which can result in long wait times for patients to be evaluated.[206]” (Line 379-382).

Attachment

Submitted filename: ResponsetoReviewers_PLOSONE.docx

pone.0298883.s004.docx (24.8KB, docx)

Decision Letter 1

Petros C Cyrus Kayange

1 Feb 2024

Genetic changes and testing associated with childhood glaucoma: a systematic review

PONE-D-23-41816R1

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Acceptance letter

Petros C Cyrus Kayange

13 Feb 2024

PONE-D-23-41816R1

PLOS ONE

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Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Checklist. Preferred Reporting Items for Systematic review and Meta-Analyses (PRISMA) checklist.

    (PDF)

    pone.0298883.s001.pdf (2.8MB, pdf)
    S1 Protocol. Prospero protocol.

    (PDF)

    pone.0298883.s002.pdf (183.9KB, pdf)
    S1 Appendix. Complete extracted characteristics from included studies.

    (XLSX)

    pone.0298883.s003.xlsx (56.2KB, xlsx)
    Attachment

    Submitted filename: ResponsetoReviewers_PLOSONE.docx

    pone.0298883.s004.docx (24.8KB, docx)

    Data Availability Statement

    All relevant data are within the manuscript and its Supporting Information files.


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