Skip to main content
. 2024 Feb 22;25(2):bbae030. doi: 10.1093/bib/bbae030

Table 3.

Over enhancers identification dataset and its independent test set performance comparison of the proposed and existing frameworks in terms of four evaluation measures

5-Fold Independent
framework ACC Sn Sp MCC ACC Sn Sp MCC
Enhancers/ Non-Enhancer iEnhancer-2L [33] 76.89 78.09 75.88 0.54 73 71 75 0.46
EnhancerPred [31] 73.18 72.57 73.79 0.43 74 73.5 74.5 0.48
tan2019ensemble [44] 74.83 73.25 76.42 0.49 - - - -
iEnhancer-DSNet [2] 76 76 76 0.52 78 78 77 0.56
iEnhancer-Deep [16] 87.77 86.99 88.54 0.75 74.02 81.5 67 0.4902
iEnhancer-EL [43] 78.03 75.67 80.39 0.56 74.75 71 78.5 0.496
Rank-GAN [51] 75.25 74.87 75.63 0.5051 75.25 74.87 75.63 0.5051
BERT [48] 76.2 79.5 73 0.525 75.6 80 71.2 0.514
iEnhancer-XG [45] 58.55 75.7 86.5 0.62 75.75 74 77.5 0.514
Tan et al. Enhancer [44] 74 73 76 0.5 76 76 76 0.51
iEnhancer-ECNN [75] - - - - 76.9 78.5 75.2 0.537
iEnhancer-EBLSTM [74] - - - - 77.2 75.5 79.5 0.534
iEnhancer-CNN [65] 80.63 75.88 88.88 0.69 77.5 78.25 79 0.585
iEnhancer-DCLA [52] 83.32 84.18 82.45 0.6668 78.25 78 78.5 0.565
iEnhancer-GAN [36] - - - - 78.4 81.1 75.8 0.567
Enhancer-RD [36] - - - - 78.8 81 76.5 0.576
iEnhancer-5Step [37] 82.3 81.1 83.5 0.65 79 82 76 0.58
iEnhacner-BERT [47] 79.4 - - 0.593 79.3 - - 0.585
iEnhancer-MRBF [53] 81.23 79.52 82.95 0.6254 79.75 82.00 77.50 0.5956
Proposed 94.6 94.6 94.9 0.892 84.3 84.2 87 0.686