Table 5.

Comparison of amino acid sequence similarity (A%) and nucleotide sequence similarity (B%) of HPG axis-related genes in 2nCC and 3nCC.

Gene			Length		A%	Amino acid		B%
Gnrh2	2nCC-1			2nCC-1:2nCC-2	99.60%		2nCC-1:2nCC-2	98.80%
				2nCC-1:3nCC-1	100%		2nCC-1:3nCC-1	100%
				2nCC-1:3nCC-2	99.60%		2nCC-1:3nCC-2	98.80%
				2nCC-1:3nCC-3	94.20%		2nCC-1:3nCC-3	93.10%
				2nCC-2:3nCC-1	99.60%		2nCC-2:3nCC-1	98.80%
	2nCC-2		261	2nCC-2:3nCC-2	100%	86	2nCC-2:3nCC-2	100%
				2nCC-2:3nCC-3	93.80%		2nCC-2:3nCC-3	91.90%
				3nCC-1:3nCC-2	99.60%		3nCC-1:3nCC-2	98.80%
	3nCC-1			3nCC-1:3nCC-3	94.20%		3nCC-1:3nCC-3	93.10%
	3nCC-2
	3nCC-3			3nCC-2:3nCC-3	93.80%		3nCC-2:3nCC-3	91.90%
Fshβ-2nCC
			393		100%	130		100%
Fshβ-3nCC
Lhβ-2nCC
			423		100%	140		100%
Lhβ-2nCC
Fshr	2nCC-1		2013	2nCC-1:2nCC-2	98.60%	670	2nCC-1:2nCC-2	99.40%
				2nCC-1:3nCC-1	99.40%		2nCC-1:3nCC-1	99.80%
				2nCC-1:3nCC-2	99.40%		2nCC-1:3nCC-2	99.50%
				2nCC-1:3nCC-3	96.00%		2nCC-1:3nCC-3	96.70%
				2nCC-2:3nCC-1	98.50%		2nCC-2:3nCC-1	99.20%
	2nCC-2			2nCC-2:3nCC-2	98.70%		2nCC-2:3nCC-2	99.10%
				2nCC-2:3nCC-3	96.30%		2nCC-2:3nCC-3	96.80%
	3nCC-1			3nCC-1:3nCC-2	99.40%		3nCC-1:3nCC-2	99.40%
				3nCC-1:3nCC-3	96.00%		3nCC-1:3nCC-3	96.50%
	3nCC-2
				3nCC-2:3nCC-3	96.20%		3nCC-2:3nCC-3	96.40%
	3nCC-3
Lhr	2nCC-1			2nCC-1:2nCC-2	99.30%		2nCC-1:2nCC-2	99.00%
				2nCC-1:3nCC-1	99.40%		2nCC-1:3nCC-1	99.20%
				2nCC-1:3nCC-2	99.60%		2nCC-1:3nCC-2	99.70%
			2127	2nCC-1:3nCC-3	99.20%	708	2nCC-1:3nCC-3	99.20%
				2nCC-2:3nCC-1	99.10%		2nCC-2:3nCC-1	98.50%
	2nCC-2			2nCC-2:3nCC-2	99.40%		2nCC-2:3nCC-2	99.20%
				2nCC-2:3nCC-3	99.20%		2nCC-2:3nCC-3	99.40%
				3nCC-1:3nCC-2	99.40%		3nCC-1:3nCC-2	99.20%
	3nCC-1		2124			707
				3nCC-1:3nCC-3	99.10%		3nCC-1:3nCC-3	98.80%
	3nCC-2
			2127	3nCC-2:3nCC-3	99.20%	708	3nCC-2:3nCC-3	99.50%
	3nCC-3