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. 2024 Feb 26;25:56. doi: 10.1186/s13059-024-03183-0

Table 2.

scRNA-seq datasets used in this paper

Dataset N. cells N. cell populations Description Technology Citation
Zeisel 3005 7 Mouse brain 10X Chromium [72]
pbmc3k 2638 9 PBMC 10X Chromium [37]
Lawlor 604 8 Human pancreas SMARTer v1 [38]
Endothelial 30,641 7 Human lung endothelium 10X Chromium [39]
Astrocyte 3013 10 Mouse brain astrocytes Single-nucleus RNA-seq [8]
Paul15 2730 19 Mouse hematopoietic stem cells MARS-seq [40]
Zhao 60,672 29 Human liver resident immune cells 10X Chromium [41]
SS3 PBMC 3128 17 PBMC Smart-seq3 [42]
CITE-seq 8617 12 CBMC CITE-seq [12]
Mesenchymal 11,408 9 Human lung mesenchymal 10X Chromium [39]
Stephenson 25,000 15 Human blood 10X Chromium [43, 44]
Ren 25,000 16 Human blood 10X Chromium [43, 45]
Yoshida 46,431 19 Human blood 10X Chromium [43, 46]
Dominguez Conde 25,980 11 Human blood 10X Chromium [43, 47]