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. 2024 Feb 1;5(2):101400. doi: 10.1016/j.xcrm.2024.101400
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

anti-human CD3-PE-Cy7 BioLegend Cat#300420, RRID: AB_439781
APC/Cyanine7 Mouse IgG1, κ isotype Ctrl Biolegend Cat#400128; RRID: AB_2892538; RRID
APC Mouse IgG1, κ isotype Ctrl Biolegend Cat#400120; RRID: AB_2888687
PE/Cyanine7 Mouse IgG1, κ isotype Ctrl Biolegend Cat#400126; RRID: AB_2861433
Brilliant Violet 605™ Mouse IgG1, κ Isotype Ctrl Biolegend Cat#400162; RRID: AB_11125373
FITC Mouse IgG1, κ Isotype Ctrl Biolegend Cat#400108; RRID: AB_326429
Brilliant Violet 421™ Mouse IgG1, κ Isotype Ctrl Biolegend Cat#400158; RRID: AB_11150232
PE Mouse IgG1, κ isotype Ctrl Biolegend Cat#400112; RRID: AB_3076354
anti-human CD69-FITC BioLegend Cat#310904; RRID: AB_314839
anti-human PD1-APC BioLegend Cat#329908; RRID: AB_940475
anti-human TIM-3-PE BioLegend Cat#345006; RRID:AB_2116576
anti-human LAG-3-PE-Cy7 BioLegend Cat#369208; RRID: AB_2629834
anti-human CD62L-PE BioLegend Cat#304806; RRID: AB_314465
anti-human CD45RO-APC BioLegend Cat#304210; RRID: AB_314426
anti-human IL-2-APC BioLegend Cat#500310; RRID: AB_315096
anti-human TNFα-PE BioLegend Cat#502909; RRID: AB_315261
anti-human Granzyme B-PE BioLegend Cat#372208; RRID: AB_2687031
anti-human IFNγ-APC BioLegend Cat#502512; RRID: AB_315237
anti-human Annexin-V-APC BioLegend Cat#640920; RRID: AB_2941659
anti-human PD1-BV421 BD Biosciences Cat#564323; RRID: AB_10900818
anti-human GLUT1 mAb Abcam Cat#ab115730; RRID: AB_10903230
anti-human GLUT3 mAb Abcam Cat#ab191071; RRID: AB_2736916
anti-human CD38 mAb Abcam Cat#ab108403; RRID: 10890803

Chemicals, peptides, and recombinant proteins

78C Selleck Cat#S8960
RBN013209 MCE Cat#HY-144987
Luteolinidin Chloride Targetmol Cat#TN1895
8-Bromo-cADP-Ribose (8-Br-cADPR) SANTA Cat#sc-201514A
cADP-Ribose (cADPR) Sigma Cat#C7344
IOX2 Selleck Cat#S2919
Adenosine 5′-diphosphoribose sodium (ADPR sodium) MCE Cat#HY-100973A
Nicotinic acid adenine dinucleotide phosphate sodium salt (NAADP sodium) sigma Cat#N5655
Dehydronitrosonisoldipine MCE Cat#HY-Z0816
DSRM-3716 MCE Cat#HY-W021879
Ned19 Targetmol Cat#T12205

Critical commercial assays

Cell Counting Kit-8 (CCK-8) DOJINDO Cat#CK04
MitoProbe™ DiIC1(5) Assay Kit Invitrogen Cat#M34151
Fluo-4 a.m. ester Thermo Fisher Cat#F14201
RNA Isolation Kit Qiagen Cat#931636
Pierce BCA Protein Assay Kit Thermo Scientific Cat#23225
Cytoplasmic Extraction Reagents Kit Thermo Scientific Cat#78833
ELISA kit MLUTI SCIENCES Cat#E2620
Seahorse XF Glycolytic Stress Assay Kit Agilent Cat#103020-100
Seahorse XF Mito Stress Assay Kit Agilent Cat#103015-100
NAD+/NADH ratio Assay Kit Beyotime Cat#S0175
Universal Sirt1 Activity Assay Kit Abcam Cat#ab156065
by Nicotinic Acid Adenine Dinucleotide Phosphate (NAADP) ELISA Kit MyBioSource Cat#MBS2000162

Deposited data

Bulk RNA-seq data in this paper Genome Sequence Archive in China National Genomics Data Center GSA:HRA004078
scRNA-seq data Gene Expression Omnibus GEO: GSE197268
scATAC-seq data China National GeneBank DataBase (CNGBdb) CNP0002442

Experimental models: Cell lines

293T cell line ATCC Cat#CRL-1573
Nalm6 cell line ATCC Cat#CRL-3273
143B cell line ATCC Cat#CRL-8303

Experimental models: Organisms/strains

Mouse: NOD-SCID-Il2rg−/− (NSG) Shanghai Model Biological Center N/A

Oligonucleotides

Primers See Table S1 for primers and RNA sequences. N/A

Recombinant DNA

Anti-CD19 scFv (FMC63) Auther W. Hohman lab N/A
Anti-GD2 scFv (14g2a-E101K) Carl June lab N/A
pLV-shRNA-CAR this manuscript N/A

Software and algorithms

Signac 1.10.0 https://doi.org/10.1038/s41592-021-01282-5 https://stuartlab.org/signac/
FlowJo 10.0 FlowJo, LLC https://www.flowjo.com/
Graphpad Prism version 10.0 GraphPad software https://www.graphpad.com
ChIPseeker R package https://doi.org/10.1002/cpz1.585 https://bioconductor.org/packages/ChIPseeker/
R version 4.2.0 R Core Team 2017 https://www.r-project.org
Seraut Rahul Satija Lab https://github.com/satijalab/seurat
GO GO Consortium http://geneontology.org/
GSEA Broad Institute https://www.gsea-msigdb.org/gsea/index.jsp
Clusterprofiler Guangchuang Yu lab http://bioconductor.org/packages/release/bioc/html/clusterProfiler.html
HISAT2 version 2.0.4 https://doi.org/10.1038/nmeth.3317 http://www.ccb.jhu.edu/software/hisat/
StringTie version 1.3.4days https://doi.org/10.1038/nbt.3122 https://github.com/gpertea/stringtie
edgeR https://doi.org/10.1093/bioinformatics/btp616 https://bioconductor.org/packages/release/bioc/html/edgeR.html