Antibodies |
|
anti-human CD3-PE-Cy7 |
BioLegend |
Cat#300420, RRID: AB_439781 |
APC/Cyanine7 Mouse IgG1, κ isotype Ctrl |
Biolegend |
Cat#400128; RRID: AB_2892538; RRID |
APC Mouse IgG1, κ isotype Ctrl |
Biolegend |
Cat#400120; RRID: AB_2888687 |
PE/Cyanine7 Mouse IgG1, κ isotype Ctrl |
Biolegend |
Cat#400126; RRID: AB_2861433 |
Brilliant Violet 605™ Mouse IgG1, κ Isotype Ctrl |
Biolegend |
Cat#400162; RRID: AB_11125373 |
FITC Mouse IgG1, κ Isotype Ctrl |
Biolegend |
Cat#400108; RRID: AB_326429 |
Brilliant Violet 421™ Mouse IgG1, κ Isotype Ctrl |
Biolegend |
Cat#400158; RRID: AB_11150232 |
PE Mouse IgG1, κ isotype Ctrl |
Biolegend |
Cat#400112; RRID: AB_3076354 |
anti-human CD69-FITC |
BioLegend |
Cat#310904; RRID: AB_314839 |
anti-human PD1-APC |
BioLegend |
Cat#329908; RRID: AB_940475 |
anti-human TIM-3-PE |
BioLegend |
Cat#345006; RRID:AB_2116576 |
anti-human LAG-3-PE-Cy7 |
BioLegend |
Cat#369208; RRID: AB_2629834 |
anti-human CD62L-PE |
BioLegend |
Cat#304806; RRID: AB_314465 |
anti-human CD45RO-APC |
BioLegend |
Cat#304210; RRID: AB_314426 |
anti-human IL-2-APC |
BioLegend |
Cat#500310; RRID: AB_315096 |
anti-human TNFα-PE |
BioLegend |
Cat#502909; RRID: AB_315261 |
anti-human Granzyme B-PE |
BioLegend |
Cat#372208; RRID: AB_2687031 |
anti-human IFNγ-APC |
BioLegend |
Cat#502512; RRID: AB_315237 |
anti-human Annexin-V-APC |
BioLegend |
Cat#640920; RRID: AB_2941659 |
anti-human PD1-BV421 |
BD Biosciences |
Cat#564323; RRID: AB_10900818 |
anti-human GLUT1 mAb |
Abcam |
Cat#ab115730; RRID: AB_10903230 |
anti-human GLUT3 mAb |
Abcam |
Cat#ab191071; RRID: AB_2736916 |
anti-human CD38 mAb |
Abcam |
Cat#ab108403; RRID: 10890803 |
|
Chemicals, peptides, and recombinant proteins |
|
78C |
Selleck |
Cat#S8960 |
RBN013209 |
MCE |
Cat#HY-144987 |
Luteolinidin Chloride |
Targetmol |
Cat#TN1895 |
8-Bromo-cADP-Ribose (8-Br-cADPR) |
SANTA |
Cat#sc-201514A |
cADP-Ribose (cADPR) |
Sigma |
Cat#C7344 |
IOX2 |
Selleck |
Cat#S2919 |
Adenosine 5′-diphosphoribose sodium (ADPR sodium) |
MCE |
Cat#HY-100973A |
Nicotinic acid adenine dinucleotide phosphate sodium salt (NAADP sodium) |
sigma |
Cat#N5655 |
Dehydronitrosonisoldipine |
MCE |
Cat#HY-Z0816 |
DSRM-3716 |
MCE |
Cat#HY-W021879 |
Ned19 |
Targetmol |
Cat#T12205
|
|
Critical commercial assays |
|
Cell Counting Kit-8 (CCK-8) |
DOJINDO |
Cat#CK04 |
MitoProbe™ DiIC1(5) Assay Kit |
Invitrogen |
Cat#M34151
|
Fluo-4 a.m. ester |
Thermo Fisher |
Cat#F14201
|
RNA Isolation Kit |
Qiagen |
Cat#931636 |
Pierce BCA Protein Assay Kit |
Thermo Scientific |
Cat#23225 |
Cytoplasmic Extraction Reagents Kit |
Thermo Scientific |
Cat#78833 |
ELISA kit |
MLUTI SCIENCES |
Cat#E2620 |
Seahorse XF Glycolytic Stress Assay Kit |
Agilent |
Cat#103020-100 |
Seahorse XF Mito Stress Assay Kit |
Agilent |
Cat#103015-100 |
NAD+/NADH ratio Assay Kit |
Beyotime |
Cat#S0175 |
Universal Sirt1 Activity Assay Kit |
Abcam |
Cat#ab156065 |
by Nicotinic Acid Adenine Dinucleotide Phosphate (NAADP) ELISA Kit |
MyBioSource |
Cat#MBS2000162 |
|
Deposited data |
|
Bulk RNA-seq data in this paper |
Genome Sequence Archive in China National Genomics Data Center |
GSA:HRA004078 |
scRNA-seq data |
Gene Expression Omnibus |
GEO: GSE197268
|
scATAC-seq data |
China National GeneBank DataBase (CNGBdb) |
CNP0002442 |
|
Experimental models: Cell lines |
|
293T cell line |
ATCC |
Cat#CRL-1573 |
Nalm6 cell line |
ATCC |
Cat#CRL-3273 |
143B cell line |
ATCC |
Cat#CRL-8303 |
|
Experimental models: Organisms/strains |
|
Mouse: NOD-SCID-Il2rg−/− (NSG) |
Shanghai Model Biological Center |
N/A |
|
Oligonucleotides |
|
Primers |
See Table S1 for primers and RNA sequences. |
N/A |
|
Recombinant DNA |
|
Anti-CD19 scFv (FMC63) |
Auther W. Hohman lab |
N/A |
Anti-GD2 scFv (14g2a-E101K) |
Carl June lab |
N/A |
pLV-shRNA-CAR |
this manuscript |
N/A |
|
Software and algorithms |
|
Signac 1.10.0 |
https://doi.org/10.1038/s41592-021-01282-5 |
https://stuartlab.org/signac/ |
FlowJo 10.0 |
FlowJo, LLC |
https://www.flowjo.com/ |
Graphpad Prism version 10.0 |
GraphPad software |
https://www.graphpad.com |
ChIPseeker R package |
https://doi.org/10.1002/cpz1.585 |
https://bioconductor.org/packages/ChIPseeker/ |
R version 4.2.0 |
R Core Team 2017 |
https://www.r-project.org |
Seraut |
Rahul Satija Lab |
https://github.com/satijalab/seurat |
GO |
GO Consortium |
http://geneontology.org/ |
GSEA |
Broad Institute |
https://www.gsea-msigdb.org/gsea/index.jsp |
Clusterprofiler |
Guangchuang Yu lab |
http://bioconductor.org/packages/release/bioc/html/clusterProfiler.html |
HISAT2 version 2.0.4 |
https://doi.org/10.1038/nmeth.3317 |
http://www.ccb.jhu.edu/software/hisat/ |
StringTie version 1.3.4days |
https://doi.org/10.1038/nbt.3122 |
https://github.com/gpertea/stringtie |
edgeR |
https://doi.org/10.1093/bioinformatics/btp616 |
https://bioconductor.org/packages/release/bioc/html/edgeR.html |