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. 2024 Feb 20;5(2):101415. doi: 10.1016/j.xcrm.2024.101415
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Anti-mouse PD-L1 antibody Bio X Cell Cat#BE0361; RRID:AB_2927503
Anti-mouse SLC7A11 antibody Proteintech Cat#26864-1-AP; RRID:AB_2880661
Anti-mouse MerTK antibody SAB Signalway Antibody Cat#32851
Anti-mouse p-MerTK antibody SAB Signalway Antibody Cat#13320
Anti-mouse ki67 antibody Abcam Cat# ab92742;
RRID:AB_10562976
Anti-mouse CD3 antibody Abcam Cat#ab16669;
RRID:AB_443425
Anti-mouse CD8 antibody Abcam Cat#ab237709;
RRID:AB_2892677
Anti-mouse CD11b antibody Abcam Cat#ab52478;
RRID:AB_868788
Anti-mouse Gr1 antibody Abcam Cat#ab25377;
RRID:AB_470492
Anti-mouse ERK 1/2 antibody Cell Signaling Technology Cat#9102;
RRID:AB_330744
Anti-mouse p-ERK1/2 (T202/Y204) antibody Cell Signaling Technology Cat#4370;
RRID:AB_2315112
Anti-mouse SP1 antibody Proteintech Cat#21962-1-AP;
RRID:AB_10898171
Anti-mouse p-SP1 (T453) antibody Abcam Cat#ab59257;
RRID:AB_946335
Anti-human CD15 antibody Abcam Cat#ab135377
Anti-human CD14 antibody Abcam Cat#ab133335;
RRID:AB_2889158
Anti-human CD11b antibody Abcam Cat#ab133357;
RRID:AB_2650514
Anti-mouse β-actin antibody Proteintech Cat#60008-1-Ig;
RRID:AB_2289225
Anti-mouse IgG antibody Bio X Cell Cat#BE0089;
RRID:AB_1107769
Anti-human HRP secondary antibody Yuanxibio Cat#A10011-60
BUV395 anti-mouse CD45 antibody BD Biosciences Cat#564279;
RRID:AB_2651134
PE/cy7 anti-mouse CD3 antibody BioLegend Cat# 100219;
RRID:AB_1732068
BV/785 anti-mouse CD4 antibody BioLegend Cat#100552; RRID:AB_2563053
BV/510 anti-mouse CD8 antibody BioLegend Cat#100752; RRID:AB_2563057
Bv421 anti-mouse IFN-γ antibody BioLegend Cat#505829; RRID:AB_10897937
PE anti-mouse CD11b antibody BioLegend Cat#101208; RRID:AB_312791
FITC anti-mouse Ly6G antibody BioLegend Cat#127606; RRID:AB_1236494
Bv421 anti-mouse Ly6C antibody BioLegend Cat# 128031;
RRID: AB_2562177
Percp/cy5.5 anti-mouse Gr1 antibody BioLegend Cat#108428; RRID:AB_893558
APC anti-mouse F480 antibody BioLegend Cat#123115; RRID:AB_893493

Bacterial and virus strains

Escherichia coli Tsingke Cat# Tsingke-001

Biological samples

Human PAAD tissue microarrays Huashan Hospital N/A

Chemicals, peptides, and recombinant proteins

Sitravatinib MCE Cat#HY-16961
SYBR TaKaRa Cat#RR067A
Red blood cell lysis buffer Tiangen Cat#RT122-01
CFSE Invitrogen Cat# 65-0850-84
BODIPY 581/591 C11 Invitrogen Cat# D3861
Pkh67 Green Fluorescent Cell Linker Kit Sigma-Aldrich Cat# PKH67GL
Propidium iodide Invitrogen Cat#P1304MP
SYTOX Green Invitrogen Cat#S7020

Critical commercial assays

IFN-γ ELISA Kit R&D Systems Cat# MIF00
CSF3 ELISA Kit R&D Systems Cat# MCS00
Tumor Dissociation Kit Miltenyi Biotec Cat#130-096-730
Cell Counting Kit-8 Dojindo Cat#CK04-11
MDSCs Isolation Kit Miltenyi Biotec Cat#130-094-538
Zombie NIRTM Fixable Viability Kit BioLegend Cat#423105

Critical commercial assays

Lipid Peroxidation MDA Assay Kit Beyotime Cat#S0131S

Deposited data

Raw and analyzed expression profiling by array https://www.ncbi.nlm.nih.gov/geo/ GEO: GSE76427
Raw and analyzed expression profiling by array https://www.ncbi.nlm.nih.gov/geo/ GEO: GSE36376
Proteomics data This paper; iProX Data iProX: IPX0007790000

Experimental models: Cell lines

Human: 293T Institute of Biochemistry and Cell Biology, Chinese Academy of Science (Shanghai China Cat# SCSP-502
Human: HepG2 Institute of Biochemistry and Cell Biology, Chinese Academy of Science (Shanghai China Cat# SCSP-510
Human: Hep3B Institute of Biochemistry and Cell Biology, Chinese Academy of Science (Shanghai China) Cat# SCSP-5045
Human: Huh7 Institute of Biochemistry and Cell Biology, Chinese Academy of Science (Shanghai China) Cat# SCSP-526
Human: MHCC97-H Liver Cancer Institute, University of Fudan University, China N/A
Human: HCC-LM3 Liver Cancer Institute, University of Fudan University, China N/A
Mouse: Hepa1-6 Institute of Biochemistry and Cell Biology, Chinese Academy of Science (Shanghai China Cat# SCSP-512

Experimental models: Organisms/strains

Mouse: C57BL/6 Beijing Vital River Laboratory Cat#219
Mouse: C3H Beijing Vital River Laboratory Cat#212

Oligonucleotides

shRNA target sequences for SLC7A11/MerTK, see Table S1 This paper N/A
SLC7A11/MerTK cDNA clone, see Table S1 This paper N/A
PCR primers for β-actin/SLC7A11/MerTK/Csf1/Csf2/Csf3/Cxcl1/Cxcl2, see Table S1 This paper N/A

Recombinant DNA

pCDH-CMV-MCS-EF1-puro Ke Lei Biological Technology Cat# kl-zl-0287-01
psPAX Ke Lei Biological Technology Cat#12260-20ul
pMD2.G Ke Lei Biological Technology Cat#12259-20ul
pLKO.1-Puro Ke Lei Biological Technology Cat#kl-zl-0961-01
pCMV-Gag-pol Ke Lei Biological Technology Cat# kl-zl-0178-01
VSVG Ke Lei Biological Technology Cat# kl-zl-0955-01

Software and algorithms

Prism 9.0.0 GraphPad Software https://graphpad.com/scientific software/prism/
RStudio (v1.4.1106) RStudio https://www.rstudio.com/
TIMER2.0 Dana Farber Cancer Institute http://timer.cistrome.org/
FlowJo v10.7.2 BD Biosciences https://www.flowjo.com/solutions/flowjo/downloads
Fiji ImageJ https://imagej.net/software/fiji/
SlideViewer 3DHISTECH https://www.3dhistech.com/