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. 2024 Feb 20;5(2):101420. doi: 10.1016/j.xcrm.2024.101420
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Anti-human CD3 (clone UCHT1) BD Biosciences Cat# 563546; RRID:AB_2744387
Anti-human CD8 (clone SK1) BD Biosciences Cat# 561617, RRID:AB_10896281
Anti-human CD16 (clone 3G8) BD Biosciences Cat# 563689; RRID:AB_2744299
Anti-human CD33 (clone P67.6) BD Biosciences Cat# 333946; RRID:AB_399961
Anti-human CD40 (clone 5C3) BD Biosciences Cat# 561211; RRID:AB_10584325
Anti-human CD80 (clone L307.4) BD Biosciences Cat# 560926; RRID:AB_10565975
Anti-human CD83 (clone HB15e) BD Biosciences Cat# 565336; RRID:AB_2739191
Anti-human CD86 (clone 2331) BD Biosciences Cat# 563460; RRID:AB_2744455
Anti-human CSF1R (clone 9-4D2-1E4) BD Biosciences Cat# 564945; RRID:AB_2739022
Anti-human CXCR4 (clone 12G5) BD Biosciences Cat# 555976; RRID:AB_398616
Anti-human B7-H4 (clone MIH43) BD Biosciences Cat# 562787; RRID:AB_2737794
Anti-human VISTA (clone MIH65.rMab) BD Biosciences Cat# 566669; RRID:AB_2739762
Anti-human IFNγR1(clone GIR208) BD Biosciences Cat# 558934; RRID:AB_397163
Anti-human pSTAT1 (clone pY701; 4a) BD Biosciences Cat# 612596; RRID:AB_399879
Anti-human pSTAT3 (clone pS727; 49/p-Stat3) BD Biosciences Cat# 558099; RRID:AB_397024
Anti-human pSTAT5 (clone pY694; 47/Stat5) BD Biosciences Cat# 560117; RRID:AB_1645546
Anti-human pmTOR (clone pS2448; O21-404) BD Biosciences Cat#563489; RRID:AB_2736872
Anti-human pAkt (clone pS473; M89-61) BD Biosciences Cat# 560378; RRID:AB_1645328
Anti-human PD-L1 (clone 29E.2A3) BioLegend Cat# 329714; RRID:AB_2563852
Anti-human CD14 (clone HCD14) BioLegend Cat# 325617; RRID:AB_830690
Anti-human PD-L2 (clone MIH18) BioLegend Cat# 345515; RRID:AB_2783233
Anti-human B7-H3 (clone MIH42) BioLegend Cat# 351010; RRID:AB_2728323
Anti-human CD45 (clone HI30) BioLegend Cat# 304043; RRID:AB_2562498
Anti-human HLA-DR (clone LN3) BioLegend Cat# 327007; RRID:AB_893579
Anti-human CD54 (clone HA58) BioLegend Cat# 353108; RRID:AB_10900254
Anti-human CD69 (clone FN50) BioLegend Cat# 310932; RRID:AB_2563696
Anti-human MRC1 (clone 15-2) BioLegend Cat# 321122; RRID:AB_10899411
Anti-human CD163 (clone GHI/61) BioLegend Cat# 321122; RRID:AB_10899411
Anti-human CD32 (clone FUN-2) BioLegend Cat# 303229; RRID:AB_2894576
Anti-human CD64 (clone 10.1) BioLegend Cat# 305028; RRID:AB_2563822
Anti-human CCR2 (clone K036C2) BioLegend Cat# 305028; RRID:AB_2563822
Anti-human CCR5 (clone J418F1) BioLegend Cat# 359145; RRID:AB_3068173
Anti-human PD-L1 (SP142) Abcam Cat# ab228462; RRID:AB_2827816
Anti-human CD3 (clone LN10) Biocare Medical Cat#3152
Anti-human CD8 (clone SP16) Biocare Medical Cat#CRM 311; RRID:AB_2750579
Anti-human CD68 (clone KP1) Biocare Medical Cat#033; RRID:AB_2885063
Anti-human Cytokeratin (clone AE1/AE3) Biocare Medical Cat#CM 011; RRID:AB_2811020
LIVE/DEAD Fixable Blue ThermoFisher Cat#L23105

Chemicals, peptides, and recombinant proteins

ERK1/2 inhibitor SCH772984 Selleck Cat# S7101
STAT1 inhibitor Fludarabine Selleck Cat# S1491
Akt1/2/3 inhibitor MK-2206 2HCl Selleck Cat# S1078
PI3Kα/δ/β inhibitor LY294002 Selleck Cat# S1105
NF-κB inhibitor QNZ Selleck Cat# S4902
mTOR inhibitor Rapamycin Selleck Cat# S1039

Critical commercial assays

pHrodo phagocytosis assay ThermoFisher Cat# P35366

Deposited data

Single-Cell RNA-sequencing data – In-house dataset This paper GSE248288

Software and algorithms

Flowjo v10 Flowjo software https://www.flowjo.com/
Graphpad Prism v9 Graphpad software https://www.graphpad.com/
EndNote X8 Endnote software https://endnote.com/
BioRender BioRender website https://www.biorender.com/
QuPath QuPath software https://doi.org/10.1038/s41598-017-17204-5
R R Core Team https://www.R-project.org/
Python Python Software Foundation http://www.python.org
Seurat Stuart et al.54 https://doi.org/10.1016/j.cell.2019.05.031
icellnet Noël et al.55 https://doi.org/10.1038/s41467-021-21244-x
CellPhoneDB V2.0 Efremova et al.56 https://github.com/ventolab/CellphoneDB
Customized scRNA-seq analysis pipeline This paper https://doi.org/10.5281/zenodo.10472431