Antibodies |
|
Anti-human CD3 (clone UCHT1) |
BD Biosciences |
Cat# 563546; RRID:AB_2744387
|
Anti-human CD8 (clone SK1) |
BD Biosciences |
Cat# 561617, RRID:AB_10896281
|
Anti-human CD16 (clone 3G8) |
BD Biosciences |
Cat# 563689; RRID:AB_2744299
|
Anti-human CD33 (clone P67.6) |
BD Biosciences |
Cat# 333946; RRID:AB_399961
|
Anti-human CD40 (clone 5C3) |
BD Biosciences |
Cat# 561211; RRID:AB_10584325
|
Anti-human CD80 (clone L307.4) |
BD Biosciences |
Cat# 560926; RRID:AB_10565975
|
Anti-human CD83 (clone HB15e) |
BD Biosciences |
Cat# 565336; RRID:AB_2739191
|
Anti-human CD86 (clone 2331) |
BD Biosciences |
Cat# 563460; RRID:AB_2744455
|
Anti-human CSF1R (clone 9-4D2-1E4) |
BD Biosciences |
Cat# 564945; RRID:AB_2739022
|
Anti-human CXCR4 (clone 12G5) |
BD Biosciences |
Cat# 555976; RRID:AB_398616
|
Anti-human B7-H4 (clone MIH43) |
BD Biosciences |
Cat# 562787; RRID:AB_2737794
|
Anti-human VISTA (clone MIH65.rMab) |
BD Biosciences |
Cat# 566669; RRID:AB_2739762
|
Anti-human IFNγR1(clone GIR208) |
BD Biosciences |
Cat# 558934; RRID:AB_397163
|
Anti-human pSTAT1 (clone pY701; 4a) |
BD Biosciences |
Cat# 612596; RRID:AB_399879
|
Anti-human pSTAT3 (clone pS727; 49/p-Stat3) |
BD Biosciences |
Cat# 558099; RRID:AB_397024
|
Anti-human pSTAT5 (clone pY694; 47/Stat5) |
BD Biosciences |
Cat# 560117; RRID:AB_1645546
|
Anti-human pmTOR (clone pS2448; O21-404) |
BD Biosciences |
Cat#563489; RRID:AB_2736872
|
Anti-human pAkt (clone pS473; M89-61) |
BD Biosciences |
Cat# 560378; RRID:AB_1645328
|
Anti-human PD-L1 (clone 29E.2A3) |
BioLegend |
Cat# 329714; RRID:AB_2563852
|
Anti-human CD14 (clone HCD14) |
BioLegend |
Cat# 325617; RRID:AB_830690
|
Anti-human PD-L2 (clone MIH18) |
BioLegend |
Cat# 345515; RRID:AB_2783233
|
Anti-human B7-H3 (clone MIH42) |
BioLegend |
Cat# 351010; RRID:AB_2728323
|
Anti-human CD45 (clone HI30) |
BioLegend |
Cat# 304043; RRID:AB_2562498
|
Anti-human HLA-DR (clone LN3) |
BioLegend |
Cat# 327007; RRID:AB_893579
|
Anti-human CD54 (clone HA58) |
BioLegend |
Cat# 353108; RRID:AB_10900254
|
Anti-human CD69 (clone FN50) |
BioLegend |
Cat# 310932; RRID:AB_2563696
|
Anti-human MRC1 (clone 15-2) |
BioLegend |
Cat# 321122; RRID:AB_10899411
|
Anti-human CD163 (clone GHI/61) |
BioLegend |
Cat# 321122; RRID:AB_10899411
|
Anti-human CD32 (clone FUN-2) |
BioLegend |
Cat# 303229; RRID:AB_2894576
|
Anti-human CD64 (clone 10.1) |
BioLegend |
Cat# 305028; RRID:AB_2563822
|
Anti-human CCR2 (clone K036C2) |
BioLegend |
Cat# 305028; RRID:AB_2563822
|
Anti-human CCR5 (clone J418F1) |
BioLegend |
Cat# 359145; RRID:AB_3068173
|
Anti-human PD-L1 (SP142) |
Abcam |
Cat# ab228462; RRID:AB_2827816
|
Anti-human CD3 (clone LN10) |
Biocare Medical |
Cat#3152 |
Anti-human CD8 (clone SP16) |
Biocare Medical |
Cat#CRM 311; RRID:AB_2750579
|
Anti-human CD68 (clone KP1) |
Biocare Medical |
Cat#033; RRID:AB_2885063
|
Anti-human Cytokeratin (clone AE1/AE3) |
Biocare Medical |
Cat#CM 011; RRID:AB_2811020
|
LIVE/DEAD Fixable Blue |
ThermoFisher |
Cat#L23105
|
|
Chemicals, peptides, and recombinant proteins |
|
ERK1/2 inhibitor SCH772984 |
Selleck |
Cat# S7101 |
STAT1 inhibitor Fludarabine |
Selleck |
Cat# S1491 |
Akt1/2/3 inhibitor MK-2206 2HCl |
Selleck |
Cat# S1078 |
PI3Kα/δ/β inhibitor LY294002 |
Selleck |
Cat# S1105 |
NF-κB inhibitor QNZ |
Selleck |
Cat# S4902 |
mTOR inhibitor Rapamycin |
Selleck |
Cat# S1039 |
|
Critical commercial assays |
|
pHrodo phagocytosis assay |
ThermoFisher |
Cat# P35366
|
|
Deposited data |
|
Single-Cell RNA-sequencing data – In-house dataset |
This paper |
GSE248288 |
|
Software and algorithms |
|
Flowjo v10 |
Flowjo software |
https://www.flowjo.com/ |
Graphpad Prism v9 |
Graphpad software |
https://www.graphpad.com/ |
EndNote X8 |
Endnote software |
https://endnote.com/ |
BioRender |
BioRender website |
https://www.biorender.com/ |
QuPath |
QuPath software |
https://doi.org/10.1038/s41598-017-17204-5 |
R |
R Core Team |
https://www.R-project.org/ |
Python |
Python Software Foundation |
http://www.python.org |
Seurat |
Stuart et al.54
|
https://doi.org/10.1016/j.cell.2019.05.031 |
icellnet |
Noël et al.55
|
https://doi.org/10.1038/s41467-021-21244-x |
CellPhoneDB V2.0 |
Efremova et al.56
|
https://github.com/ventolab/CellphoneDB |
Customized scRNA-seq analysis pipeline |
This paper |
https://doi.org/10.5281/zenodo.10472431 |