Antibodies |
|
CD19 CAR FMC63 Idiotype Antibody, REAfinity™, Biotin |
Miltenyi Biotec |
Cat#130-127-349; RRID:AB_2923109
|
Biotin Antibody, PE, REAfinity™ |
Miltenyi Biotec |
Cat#130-110-951; RRID:AB_2661378
|
Brilliant Violet 421(TM) anti-human CD152 (CTLA-4) |
BioLegend |
Cat#369605; RRID:AB_2616790
|
CD3 Antibody, anti-human, APC |
Miltenyi Biotec |
Cat#130-113-125; RRID:AB_2725953
|
Anti-CD19 APC (LT19) |
ImmunoTools |
Cat#21270196; RRID:AB_2923108
|
Rabbit Anti-TEM1/CD248 Polyclonal Antibody, FITC Conjugated |
Bioss |
Cat#bs-2101R-FITC; RRID:AB_11083094
|
Anti-human CD152 (CTLA-4) PE/Cyanine7 |
BioLegend |
Cat#369614; RRID:AB_2632876
|
Anti-human CD3 BV421 |
BioLegend |
Cat#317344; RRID:AB_2565849
|
Goat Anti-mouse IgG Fab-Biotin |
SouthernBiotech |
Cat#1015-08; RRID:AB_2794195
|
Horse Anti-mouse HRP |
Cell Signaling Technologies |
Cat#7076S; RRID:AB_330924
|
Anti-CD20 APC (LT20) |
ImmunoTools |
Cat#21279206; RRID:AB_2923110
|
CD80 (B7-1) Monoclonal Antibody (2D10.4), Biotin, eBioscience |
Thermo Fisher Scientific |
Cat#13-0809-82; RRID:AB_466513
|
B7-2/CD86 Antibody (SPM600) |
Novus Biologicals |
Cat#NBP2-44515; RRID:AB_2923113
|
CD3 Monoclonal Antibody (UCHT1), Alexa Fluor™ 532, eBioscience |
Thermo Fisher Scientific |
Cat#58-0038-42; RRID:AB_11218675
|
Alexa Fluor® 488 Streptavidin |
BioLegend |
Cat#405235 |
Alexa Fluor® 647 anti-human CD19 |
BioLegend |
Cat#302220; RRID:AB_389335
|
B7-2/CD86 Antibody (BU63) |
Novus Biologicals |
Cat#NBP2-25208; RRID:AB_2923115
|
Mouse Anti-IFN-gamma Monoclonal Antibody, Unconjugated, Clone NIB42 |
BD Biosciences |
Cat#551221; RRID:AB_394099
|
Mouse Anti-IL-2 Monoclonal Antibody, Unconjugated, Clone 5344.111 |
BD Biosciences |
Cat#555051; RRID:AB_395672
|
Mouse Anti-IFN-gamma Monoclonal Antibody, Biotin Conjugated, Clone 4S.B3 |
BD Biosciences |
Cat#554550; RRID:AB_395472
|
Mouse Anti-IL-2 Monoclonal Antibody, Biotin Conjugated, Clone B33-2 |
BD Biosciences |
Cat#555040; RRID:AB_395666
|
Anti-APC MicroBeads |
Miltenyi Biotec |
Cat#130-090-855; RRID:AB_244367
|
CD3 Antibody, anti-human, PE, REAfinity™ |
Miltenyi Biotec |
Cat#130-113-139; RRID:AB_2725967
|
Brilliant Violet 510™ anti-human CD5 Antibody |
BioLegend |
Cat#364018; RRID:AB_2565728
|
CD19 Antibody, anti-human, FITC, REAfinity™ |
Miltenyi Biotec |
Cat#130-113-645; RRID:AB_2726198
|
APC/Fire™ 750 anti-human CD20 Antibody |
BioLegend |
Cat#302357; RRID:AB_2572125
|
Brilliant Violet 421™ anti-human CD80 Antibody |
BioLegend |
Cat#305222; RRID:AB_2564407
|
anti-human CD86 APC-conjugated |
ImmunoTools |
Cat#21480866; RRID:AB_2923116
|
anti-human CD80 PE-conjugated |
ImmunoTools |
Cat#21270804; RRID:AB_2923118
|
B7-2/CD86 Antibody (BU63) [Alexa Fluor® 532] |
Novus Biologicals |
Cat# NBP2-34569AF532; RRID:AB_2923133
|
PE anti-mouse CD80 Antibody, Clone16-10A1 |
BioLegend |
Cat#104707; RRID:AB_313128
|
PE/Cyanine7 anti-mouse CD86, Clone GL-1 |
BioLegend |
Cat#105014; RRID:AB_439783
|
APC anti-mouse CD152 Antibody, Clone UC10-4B9 |
BioLegend |
Cat#106309; RRID:AB_2230158
|
Ultra-LEAF Purified anti-mouse CD28 Antibody, Clone 37.51 |
BioLegend |
Cat#102116; RRID:AB_11147170
|
Ultra-LEAF(TM) Purified anti-mouse CD3epsilon antibody, Clone145-2C11 |
BioLegend |
Cat#100340; RRID:AB_11149115
|
Brilliant Violet 421(TM) anti-mouse CD3epsilon antibody, Clone1452C11 |
BioLegend |
Cat#100341; RRID:AB_2562556
|
Anti-mouse CD19 APC, Clone 1D3 |
Immunotools |
Cat#22270196; RRID:AB_2938950
|
Biotin-SP-AffiniPure F(ab')2 Fragment Goat Anti-Rat IgG, F(ab')2 Fragment Specific (min X Hu,Bov,Hrs Sr Prot) antibody |
Jackson ImmunoResearch Labs |
Cat#112-066-072; RRID:AB_2338185
|
Brilliant Violet 510(TM) anti-mouse CD19 antibody, Clone 6D5 |
BioLegend |
Cat#115545; RRID:AB_2562136
|
IFN gamma Monoclonal Antibody (AN-18), eBioscience, Clone AN-18 |
Thermo Fisher Scientific |
Cat#14-7313-81; RRID:AB_468471
|
Biotin anti-Mouse IFN gamma |
BD Pharmingen |
Cat#551506; RRID:AB_394224
|
anti-p-IKK alpha/beta (S176 + S180) |
Bioss |
Cat#bs-3237R; RRID:AB_10883648
|
anti-Rabbit IgG HRP |
Santa Cruz Biotechnology |
Cat#sc-2030; RRID:AB_631747
|
Goat F(ab')2 Anti-Human IgG, Mouse ads-PE |
Southern Biotech |
Cat#2043-09; RRID:AB_2795669
|
Purified anti-human CD19 Antibody |
BioLegend |
Cat#302202; RRID:AB_314232
|
Biotin anti-mouse IgG1 Antibody |
BioLegend |
Cat#406603; RRID:AB_315062
|
G4S Linker (E7O2V) Rabbit mAb (Alexa Fluor ® 488 Conjugate) |
Cell Signaling Technologies |
Cat#50515S; RRID:AB_2941670
|
PE anti-human CD25 |
BioLegend |
Cat#302606; RRID:AB_314276
|
CD3 Antibody, anti-human, FITC, REAfinity™ |
Miltenyi Biotec |
Cat#130-113-138; RRID:AB_2725966
|
Brilliant Violet 510™ anti-human CD4 |
BioLegend |
Cat#317444; RRID:AB_2561866
|
CD8 Antibody, anti-human, APC-Vio® 770, REAfinity™ |
Miltenyi Biotec |
Cat#130-110-819; RRID:AB_2659246
|
Brilliant Violet 421™ anti-human CD3 |
BioLegend |
Cat#317344; RRID:AB_2565849
|
APC anti-human CD27 |
BioLegend |
Cat#356410; RRID:AB_2561957
|
PE/Fire™ 700 anti-human CD45RA |
BioLegend |
Cat#304171; RRID:AB_2888784) |
FITC anti-human CD45RO |
BioLegend |
Cat#304204; RRID:AB_314420
|
APC/Fire™ 750 anti-human CD62L |
BioLegend |
Cat#304845; RRID:AB_2629675
|
PE anti-human CD4 |
BioLegend |
Cat#317410; RRID:AB_571955
|
FITC anti-human CD8a |
BioLegend |
Cat#300906; RRID:AB_314110
|
PE/Cyanine7 anti-human TIGIT (VSTM3) |
BioLegend |
Cat#372713; RRID:AB_2632928
|
APC anti-human CD279 (PD-1) |
BioLegend |
Cat#329908; RRID:AB_940475
|
APC/Fire(TM) 750 anti-human CD366 (Tim-3) |
BioLegend |
Cat#345043; RRID:AB_2632855
|
Goat F(ab')2 Anti-Human IgG, Mouse ads-FITC |
SouthernBiotech |
Cat#2043-02; RRID:AB_2795666
|
|
Chemicals, peptides, and recombinant proteins |
|
Recombinant Human Transforming Growth Factor β 3 |
ImmunoTools |
Cat#11344485 |
PEIpro® |
Polyplus |
Cat#101000026 |
Recombinant Human B7-2 Fc |
Peprotech |
Cat#310-33 |
Propidium Iodide Solution |
Miltenyi Biotec |
Cat#130-093-233 |
CellTrace Violet Cell Proliferation Kit |
Invitrogen |
Cat#C34557
|
Streptavidin-PE, SAv-PE |
BioLegend |
Cat#405203 |
7-AAD Viability Staining Solution |
BioLegend |
Cat#420404 |
Streptavidin-POD Conjugate |
Roche Diagnostics |
Cat#11089153001 |
Streptavidin FITC-conjugated |
ImmunoTools |
Cat#31274243 |
Recombinant Human CD19-Fc Chimera |
BioLegend |
Cat#789006 |
Human B7-1/CD80 Protein, Fc Tag (MALS verified) |
Acro Biosystems |
Cat#B71-H5259 |
Human B7-2/CD86 Protein, Fc Tag, premium grade |
Acro Biosystems |
Cat#CD6-H5257 |
|
Critical commercial assays |
|
ELISA MAX™ Deluxe Set Human IL-6 |
BioLegend |
Cat#430504 |
MojoSort Mouse CD3 T cell Isolation Kit |
BioLegend |
Cat#480031 |
MojoSort Mouse Pan B Cell Isolation Kit II |
BioLegend |
Cat#480087 |
CellTrace™ Cell Violet Proliferation Kit |
Invitrogen |
Cat#C34557
|
|
Experimental models: Cell lines |
|
Human: Raji |
DSMZ |
Cat#ACC 319; RRID:CVCL_0511 |
Human: SU-DHL-10 |
DSMZ |
Cat#ACC 576; RRID:CVCL_1889 |
Human: DOHH-2 |
DSMZ |
Cat#ACC 47; RRID:CVCL_1179 |
Human: Oci-Ly1 |
DSMZ |
Cat#ACC 722; RRID:CVCL_1879 |
Human: Oci-Ly19 |
DSMZ |
Cat#ACC 528; RRID:CVCL_1878 |
Human: HEK-293 |
DSMZ |
Cat#ACC 305; RRID:CVCL_0045 |
Human: Vascular Wall-Typical Mesenchymal Stem Cells (Hita08/20P5) |
Diana Klein39
|
N/A |
Murine: Prdm1.fl/Myd88/Bcl2-derived lymphoma cell line |
Ruth Flümann40
|
N/A |
|
Experimental models: Organisms/strains |
|
Mouse: Rag2tm1.1Flv Il2rgtm1.1Flv (Rag2- γc-) |
The Jackson Laboratory |
Cat#014593; RRID:IMSR_JAX:014593 |
Mouse: Prdm1fl/fl; Myd88cond.p.L252P/wt;Rosa26LSL.BCL2.IRES.GFP/wt;Cd19Cre/wt (Prdm1.fl/Myd88/Bcl2) |
Ruth Flümann40
|
N/A |
Mouse: C57BL/6J (Black 6) |
The Jackson Laboratory |
RRID:IMSR_JAX:000664 |
|
Recombinant DNA |
|
Plasmid: pBullet_aCD19_CD3zeta_P2A_CTLA4_4-1BB |
This paper |
N/A |
Plasmid: pBullet_aCD19_CD3zeta |
This paper |
N/A |
Plasmid: pBullet_aCD19_CD3zeta_4-1BB |
This paper |
N/A |
Plasmid: pBullet_aCD20_CD3zeta_4-1BB |
This paper |
N/A |
Plasmid: pBullet_aCD20_CD3zeta_P2A_CTLA-4_4-1BB |
This paper |
N/A |
Plasmid: pBullet_aCD19_CD3zeta_P2A_aCD86_4-1BB |
This paper |
N/A |
Plasmid: pQCXIP_eGFP |
This paper |
N/A |
Plasmid: pQCXIP_fLuc_tdTomato |
This paper |
N/A |
|
Software and algorithms |
|
R code |
This paper |
https://doi.org/10.5281/zenodo.10342282 |
RStudio |
RStudio Team |
https://www.rstudio.com/ |
R Core |
R Core Team |
https://www.r-project.org/ |
ggpubr |
|
https://cran.r-project.org/web/packages/ggpubr/index.html |
Survival |
|
https://cran.r-project.org/web/packages/survival/index.html |
Survminer |
|
https://cran.r-project.org/web/packages/survminer/index.html |
rstatix |
|
https://cran.r-project.org/web/packages/rstatix/index.html |
|
Other |
|
Mesenchymal Stem Cell Growth Medium 2 |
PromoCell |
Cat#C-28009 |
Canto II Flow Cytometer |
Becton Dickinson |
https://www.bdbiosciences.com/en-eu/products/instruments/flow-cytometers/clinical-cell-analyzers/facscanto |
Multiskan GO Microplate Spectrophotometer |
Thermo Scientific |
https://www.fishersci.de/shop/products/multiskan-go-microplate-spectrophotometer/p-4530546 |
Hidex Sense Microplate Reader |
Hidex |
https://www.hidex.de/hidex-sense/ |
IVIS 200 Spectrum In Vivo Imaging System |
PerkinElmer |
https://www.perkinelmer.com/de/product/ivis-instrument-spectrum-120v-andor-c-124262 |
FV 1000 confocal laser scanning microscope |
Olympus |
https://www.olympus-lifescience.com/de/technology/museum/micro/2004/ |
UC90 4K microscope |
Olympus |
https://www.olympus-lifescience.com/de/camera/color/uc90/ |
BX53 microscope |
Olympus |
https://www.olympus-lifescience.com/en/microscopes/upright/bx53f2/ |
Fusion Solo S |
Vilber |
https://www.vilber.com/fusion-solo-s/ |
MACSQuant X |
Miltenyi Biotec |
https://www.miltenyibiotec.com/US-en/products/macsquant-x.html |