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. 2024 Feb 9;5(2):101421. doi: 10.1016/j.xcrm.2024.101421
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

CD19 CAR FMC63 Idiotype Antibody, REAfinity™, Biotin Miltenyi Biotec Cat#130-127-349; RRID:AB_2923109
Biotin Antibody, PE, REAfinity™ Miltenyi Biotec Cat#130-110-951; RRID:AB_2661378
Brilliant Violet 421(TM) anti-human CD152 (CTLA-4) BioLegend Cat#369605; RRID:AB_2616790
CD3 Antibody, anti-human, APC Miltenyi Biotec Cat#130-113-125; RRID:AB_2725953
Anti-CD19 APC (LT19) ImmunoTools Cat#21270196; RRID:AB_2923108
Rabbit Anti-TEM1/CD248 Polyclonal Antibody, FITC Conjugated Bioss Cat#bs-2101R-FITC; RRID:AB_11083094
Anti-human CD152 (CTLA-4) PE/Cyanine7 BioLegend Cat#369614; RRID:AB_2632876
Anti-human CD3 BV421 BioLegend Cat#317344; RRID:AB_2565849
Goat Anti-mouse IgG Fab-Biotin SouthernBiotech Cat#1015-08; RRID:AB_2794195
Horse Anti-mouse HRP Cell Signaling Technologies Cat#7076S; RRID:AB_330924
Anti-CD20 APC (LT20) ImmunoTools Cat#21279206; RRID:AB_2923110
CD80 (B7-1) Monoclonal Antibody (2D10.4), Biotin, eBioscience Thermo Fisher Scientific Cat#13-0809-82; RRID:AB_466513
B7-2/CD86 Antibody (SPM600) Novus Biologicals Cat#NBP2-44515; RRID:AB_2923113
CD3 Monoclonal Antibody (UCHT1), Alexa Fluor™ 532, eBioscience Thermo Fisher Scientific Cat#58-0038-42; RRID:AB_11218675
Alexa Fluor® 488 Streptavidin BioLegend Cat#405235
Alexa Fluor® 647 anti-human CD19 BioLegend Cat#302220; RRID:AB_389335
B7-2/CD86 Antibody (BU63) Novus Biologicals Cat#NBP2-25208; RRID:AB_2923115
Mouse Anti-IFN-gamma Monoclonal Antibody, Unconjugated, Clone NIB42 BD Biosciences Cat#551221; RRID:AB_394099
Mouse Anti-IL-2 Monoclonal Antibody, Unconjugated, Clone 5344.111 BD Biosciences Cat#555051; RRID:AB_395672
Mouse Anti-IFN-gamma Monoclonal Antibody, Biotin Conjugated, Clone 4S.B3 BD Biosciences Cat#554550; RRID:AB_395472
Mouse Anti-IL-2 Monoclonal Antibody, Biotin Conjugated, Clone B33-2 BD Biosciences Cat#555040; RRID:AB_395666
Anti-APC MicroBeads Miltenyi Biotec Cat#130-090-855; RRID:AB_244367
CD3 Antibody, anti-human, PE, REAfinity™ Miltenyi Biotec Cat#130-113-139; RRID:AB_2725967
Brilliant Violet 510™ anti-human CD5 Antibody BioLegend Cat#364018; RRID:AB_2565728
CD19 Antibody, anti-human, FITC, REAfinity™ Miltenyi Biotec Cat#130-113-645; RRID:AB_2726198
APC/Fire™ 750 anti-human CD20 Antibody BioLegend Cat#302357; RRID:AB_2572125
Brilliant Violet 421™ anti-human CD80 Antibody BioLegend Cat#305222; RRID:AB_2564407
anti-human CD86 APC-conjugated ImmunoTools Cat#21480866; RRID:AB_2923116
anti-human CD80 PE-conjugated ImmunoTools Cat#21270804; RRID:AB_2923118
B7-2/CD86 Antibody (BU63) [Alexa Fluor® 532] Novus Biologicals Cat# NBP2-34569AF532; RRID:AB_2923133
PE anti-mouse CD80 Antibody, Clone16-10A1 BioLegend Cat#104707; RRID:AB_313128
PE/Cyanine7 anti-mouse CD86, Clone GL-1 BioLegend Cat#105014; RRID:AB_439783
APC anti-mouse CD152 Antibody, Clone UC10-4B9 BioLegend Cat#106309; RRID:AB_2230158
Ultra-LEAF Purified anti-mouse CD28 Antibody, Clone 37.51 BioLegend Cat#102116; RRID:AB_11147170
Ultra-LEAF(TM) Purified anti-mouse CD3epsilon antibody, Clone145-2C11 BioLegend Cat#100340; RRID:AB_11149115
Brilliant Violet 421(TM) anti-mouse CD3epsilon antibody, Clone1452C11 BioLegend Cat#100341; RRID:AB_2562556
Anti-mouse CD19 APC, Clone 1D3 Immunotools Cat#22270196; RRID:AB_2938950
Biotin-SP-AffiniPure F(ab')2 Fragment Goat Anti-Rat IgG, F(ab')2 Fragment Specific (min X Hu,Bov,Hrs Sr Prot) antibody Jackson ImmunoResearch Labs Cat#112-066-072; RRID:AB_2338185
Brilliant Violet 510(TM) anti-mouse CD19 antibody, Clone 6D5 BioLegend Cat#115545; RRID:AB_2562136
IFN gamma Monoclonal Antibody (AN-18), eBioscience, Clone AN-18 Thermo Fisher Scientific Cat#14-7313-81; RRID:AB_468471
Biotin anti-Mouse IFN gamma BD Pharmingen Cat#551506; RRID:AB_394224
anti-p-IKK alpha/beta (S176 + S180) Bioss Cat#bs-3237R; RRID:AB_10883648
anti-Rabbit IgG HRP Santa Cruz Biotechnology Cat#sc-2030; RRID:AB_631747
Goat F(ab')2 Anti-Human IgG, Mouse ads-PE Southern Biotech Cat#2043-09; RRID:AB_2795669
Purified anti-human CD19 Antibody BioLegend Cat#302202; RRID:AB_314232
Biotin anti-mouse IgG1 Antibody BioLegend Cat#406603; RRID:AB_315062
G4S Linker (E7O2V) Rabbit mAb (Alexa Fluor ® 488 Conjugate) Cell Signaling Technologies Cat#50515S; RRID:AB_2941670
PE anti-human CD25 BioLegend Cat#302606; RRID:AB_314276
CD3 Antibody, anti-human, FITC, REAfinity™ Miltenyi Biotec Cat#130-113-138; RRID:AB_2725966
Brilliant Violet 510™ anti-human CD4 BioLegend Cat#317444; RRID:AB_2561866
CD8 Antibody, anti-human, APC-Vio® 770, REAfinity™ Miltenyi Biotec Cat#130-110-819; RRID:AB_2659246
Brilliant Violet 421™ anti-human CD3 BioLegend Cat#317344; RRID:AB_2565849
APC anti-human CD27 BioLegend Cat#356410; RRID:AB_2561957
PE/Fire™ 700 anti-human CD45RA BioLegend Cat#304171; RRID:AB_2888784)
FITC anti-human CD45RO BioLegend Cat#304204; RRID:AB_314420
APC/Fire™ 750 anti-human CD62L BioLegend Cat#304845; RRID:AB_2629675
PE anti-human CD4 BioLegend Cat#317410; RRID:AB_571955
FITC anti-human CD8a BioLegend Cat#300906; RRID:AB_314110
PE/Cyanine7 anti-human TIGIT (VSTM3) BioLegend Cat#372713; RRID:AB_2632928
APC anti-human CD279 (PD-1) BioLegend Cat#329908; RRID:AB_940475
APC/Fire(TM) 750 anti-human CD366 (Tim-3) BioLegend Cat#345043; RRID:AB_2632855
Goat F(ab')2 Anti-Human IgG, Mouse ads-FITC SouthernBiotech Cat#2043-02; RRID:AB_2795666

Chemicals, peptides, and recombinant proteins

Recombinant Human Transforming Growth Factor β 3 ImmunoTools Cat#11344485
PEIpro® Polyplus Cat#101000026
Recombinant Human B7-2 Fc Peprotech Cat#310-33
Propidium Iodide Solution Miltenyi Biotec Cat#130-093-233
CellTrace Violet Cell Proliferation Kit Invitrogen Cat#C34557
Streptavidin-PE, SAv-PE BioLegend Cat#405203
7-AAD Viability Staining Solution BioLegend Cat#420404
Streptavidin-POD Conjugate Roche Diagnostics Cat#11089153001
Streptavidin FITC-conjugated ImmunoTools Cat#31274243
Recombinant Human CD19-Fc Chimera BioLegend Cat#789006
Human B7-1/CD80 Protein, Fc Tag (MALS verified) Acro Biosystems Cat#B71-H5259
Human B7-2/CD86 Protein, Fc Tag, premium grade Acro Biosystems Cat#CD6-H5257

Critical commercial assays

ELISA MAX™ Deluxe Set Human IL-6 BioLegend Cat#430504
MojoSort Mouse CD3 T cell Isolation Kit BioLegend Cat#480031
MojoSort Mouse Pan B Cell Isolation Kit II BioLegend Cat#480087
CellTrace™ Cell Violet Proliferation Kit Invitrogen Cat#C34557

Experimental models: Cell lines

Human: Raji DSMZ Cat#ACC 319; RRID:CVCL_0511
Human: SU-DHL-10 DSMZ Cat#ACC 576; RRID:CVCL_1889
Human: DOHH-2 DSMZ Cat#ACC 47; RRID:CVCL_1179
Human: Oci-Ly1 DSMZ Cat#ACC 722; RRID:CVCL_1879
Human: Oci-Ly19 DSMZ Cat#ACC 528; RRID:CVCL_1878
Human: HEK-293 DSMZ Cat#ACC 305; RRID:CVCL_0045
Human: Vascular Wall-Typical Mesenchymal Stem Cells (Hita08/20P5) Diana Klein39 N/A
Murine: Prdm1.fl/Myd88/Bcl2-derived lymphoma cell line Ruth Flümann40 N/A

Experimental models: Organisms/strains

Mouse: Rag2tm1.1Flv Il2rgtm1.1Flv (Rag2- γc-) The Jackson Laboratory Cat#014593; RRID:IMSR_JAX:014593
Mouse: Prdm1fl/fl; Myd88cond.p.L252P/wt;Rosa26LSL.BCL2.IRES.GFP/wt;Cd19Cre/wt (Prdm1.fl/Myd88/Bcl2) Ruth Flümann40 N/A
Mouse: C57BL/6J (Black 6) The Jackson Laboratory RRID:IMSR_JAX:000664

Recombinant DNA

Plasmid: pBullet_aCD19_CD3zeta_P2A_CTLA4_4-1BB This paper N/A
Plasmid: pBullet_aCD19_CD3zeta This paper N/A
Plasmid: pBullet_aCD19_CD3zeta_4-1BB This paper N/A
Plasmid: pBullet_aCD20_CD3zeta_4-1BB This paper N/A
Plasmid: pBullet_aCD20_CD3zeta_P2A_CTLA-4_4-1BB This paper N/A
Plasmid: pBullet_aCD19_CD3zeta_P2A_aCD86_4-1BB This paper N/A
Plasmid: pQCXIP_eGFP This paper N/A
Plasmid: pQCXIP_fLuc_tdTomato This paper N/A

Software and algorithms

R code This paper https://doi.org/10.5281/zenodo.10342282
RStudio RStudio Team https://www.rstudio.com/
R Core R Core Team https://www.r-project.org/
ggpubr https://cran.r-project.org/web/packages/ggpubr/index.html
Survival https://cran.r-project.org/web/packages/survival/index.html
Survminer https://cran.r-project.org/web/packages/survminer/index.html
rstatix https://cran.r-project.org/web/packages/rstatix/index.html

Other

Mesenchymal Stem Cell Growth Medium 2 PromoCell Cat#C-28009
Canto II Flow Cytometer Becton Dickinson https://www.bdbiosciences.com/en-eu/products/instruments/flow-cytometers/clinical-cell-analyzers/facscanto
Multiskan GO Microplate Spectrophotometer Thermo Scientific https://www.fishersci.de/shop/products/multiskan-go-microplate-spectrophotometer/p-4530546
Hidex Sense Microplate Reader Hidex https://www.hidex.de/hidex-sense/
IVIS 200 Spectrum In Vivo Imaging System PerkinElmer https://www.perkinelmer.com/de/product/ivis-instrument-spectrum-120v-andor-c-124262
FV 1000 confocal laser scanning microscope Olympus https://www.olympus-lifescience.com/de/technology/museum/micro/2004/
UC90 4K microscope Olympus https://www.olympus-lifescience.com/de/camera/color/uc90/
BX53 microscope Olympus https://www.olympus-lifescience.com/en/microscopes/upright/bx53f2/
Fusion Solo S Vilber https://www.vilber.com/fusion-solo-s/
MACSQuant X Miltenyi Biotec https://www.miltenyibiotec.com/US-en/products/macsquant-x.html