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. 2024 Feb 27;12(1):14. doi: 10.1007/s40203-023-00184-y

Table 2.

Comparative assessment of Withanolides A and B with Beta, Delta, Gamma and Omicron variants of SARS-CoV-2 spike glycoprotein

S.No. SARS-CoV-2 variant PDB ID Ligand Binding energy (B.E.) using AutoDock Vina (kcal/mol) Binding energy (B.E.) using AutoDock v4.2.6 (kcal/mol) Kd (dissociation constant)
1. Betaa 6M0J Withanolide A −9.3 −9.1 214.02 nM
2. Betaa 6M0J Withanolide B −9.2 −8.88 308.96 nM
3. Gamma 7EKC Withanolide A −8.6 −4.94 240.74 µM
4. Gamma 7EKC Withanolide B −7.5 −5.44 102.53 µM
5. Delta 7V7N Withanolide A −10.0 −8.63 475.1 nM
6. Delta 7V7N Withanolide B −9.6 −9.27 159.47 nM
7. Omicron (BA.1) Modeled Structure Withanolide A −9.4 −7.67 2.4 µM
8. Omicron (BA.1) Modeled Structure Withanolide B −9.7 −8.09 1.17 µM