Table 3.

Comparison of PEbA alignments and DEDAL alignments (in average SP scores) for alignments less than 500 characters in length

	PEbA	DEDAL
RV11	0.595	0.495
RV12	0.867	0.840
RV911	0.583	0.522
RV912	0.755	0.757
RV913	0.904	0.906