TABLE 2.

Summary statistics for sequence quality and alignment information.

Sample	Raw reads	Clean reads	Q20 (%)	Q30 (%)	GC Pct (%)	Total mapped	Uniquely mapped
Late1	91,303,490	89,513,990	96.86	91.59	46.33	84,088,885 (93.94%)	81,637,435 (91.2%)
Late2	101,718,054	99,544,712	96.88	91.76	46.94	93,360,531 (93.79%)	90,319,483 (90.73%)
Late3	89,284,248	87,474,918	96.94	91.77	46.7	82,186,244 (93.95%)	79,133,106 (90.46%)
Late5	88,621,544	86,565,784	96.41	90.51	47.18	80,218,421 (92.67%)	77,715,574 (89.78%)
Pre25	104,413,870	101,823,504	97.07	92.12	46.86	95,666,581 (93.95%)	92,680,183 (91.02%)
Pre26	93,332,334	90,510,302	97.08	92.05	45.56	85,418,005 (94.37%)	83,532,973 (92.29%)
Pre28	90,282,166	88,758,264	97.09	92.09	46.6	83,593,248 (94.18%)	81,077,877 (91.35%)
Pre29	93,306,348	90,256,188	97.03	92	45.51	84,848,360 (94.01%)	82,708,657 (91.64%)
Peak10	92,547,334	90,696,320	97.06	92.09	47.45	85,154,842 (93.89%)	81,684,877 (90.06%)
Peak11	86,443,334	83,522,870	96.88	91.57	46.61	78,938,778 (94.51%)	76,717,770 (91.85%)
Peak12	103,790,790	101,415,404	97.12	92.21	47.15	95,446,885 (94.11%)	91,569,791 (90.29%)
Peak9	93,705,468	91,694,550	97.21	92.38	47.38	86,472,645 (94.31%)	82,238,961 (89.69%)