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SnpEff functional annotation categories for Scalpel and Parliament calls.
| Functional annotation term | Scalpel | Parliament | Parliament + Scalpel |
|---|---|---|---|
| Intergenic | 59,595 | 15,238 | 1,900 |
| Coding | 51,849 | 14,724 | 28 |
| Splice site | 339 | 959 | 0 |
| Intronic | 492 | 151 | 1,475 |
| 5′UTR | 201 | 113 | 0 |
| 3′UTR | 739 | 201 | 0 |
| Other | 10,857 | 887 | 0 |
| Totals | 124,072 | 32,273 | 3,403 |
Breakdown of genomic functional annotation terms provided by SnpEff. There are slightly more annotation terms than loci as some loci overlap more than one region.
