Table 1.
Autoencoder architecture for RNA (left) and ATAC (right)
| Encoder | Encoder |
|---|---|
| Batchnorm (267,17) | Batchnorm (61,744) |
| Linear (26,717, 1000) | Linear (61,744, 1000) |
| Batchnorm (1000) | Batchnorm (1000) |
| LeakyReLU (0.2) | LeakyReLU (0.2) |
| Linear (1000, 1000) | Linear (1000, 1000) |
| Batchnorm (1000) | Batchnorm (1000) |
| LeakyReLU (0.2) | LeakyReLU (0.2) |
| Linear (1000, 64) | Linear (1000, 64) |
| Decoder | Decoder |
| Linear (64, 500) | Linear (64, 500) |
| Batchnorm (500) | Batchnorm (500) |
| LeakyReLU (0.2) | LeakyReLU (0.2) |
| Linear (500, 1000) | Linear (500, 1000) |
| Batchnorm (1000) | Batchnorm (1000) |
| LeakyReLU (0.2) | LeakyReLU (0.2) |
| Linear (1000, 26,717) | Linear (1000, 61,744) |
| Batchnorm (26,717) | |
| Multiply by σ and add µ |