Table 2.

List of Manech Tête Rousse deficient homozygous haplotypes

Haplotype	OAR	aNumber of markers	bPosition (Mb)	cHeterozygous carrier frequency (%)	Number of homozygotes
					Exp.	Obs.	Deficit (%)	Poisson P-value
MTRDHH1	20	32	23.0–25.0	9.7	13	0	100	$2.9\times {10}^{-6}$
MTRDHH2	1	66	251.9–256.4	8.7	10	0	100	$3.8\times {10}^{-5}$
MTRDHH3	1	39	103.8–106.6	7.8	9	0	100	$9.6\times {10}^{-5}$
MTRDHH4	10	26	30.5–31.5	8.7	11	1	91	$1.5\times {10}^{-4}$
MTRDHH5	13	29	64.3–67.2	16.6	49	8	84	$5.3\times {10}^{-13}$

OAR Ovis aries chromosome

Exp Expected

Obs Observed

^aDetails on the MTRDHH haplotypes and SNP composition are in Additional file 5: Table S4

^bPosition on the ovine genome assembly Oar_rambouillet_v1.0

^cFrequency of carriers in the entire genotyped population (n = 6845)