Fig. 2.

RIL-seq reveals the K. pneumoniae Hfq-dependent RNA interactome. (A) Relative distribution of RNA classes and their organization in chimeric reads. (B) Circos plot of all RIL-seq interactions recovered in both replicates involving K. pneumoniae sRNAs. Interaction hubs of selected sRNAs are indicated. (C) Relative distribution of numbers of interaction partners in Hfq RIL-seq for all sRNAs. (D) Circos plot of all RIL-seq interactions recovered in both replicates involving previously unknown candidate sRNAs. Selected sRNAs with multiple partners are indicated. (E) Circos plot of all RIL-seq interactions recovered in both replicates involving sRNA derived from mRNA 3′ ends. CpxQ as an interaction hub is marked. The interaction between DinR and ftsZ mRNA is highlighted in red.