Table 2. Nonbonded Interaction Parameters for Stacking Interactions Associated with Equation 4.
| Stacking |
Stacking |
||||
|---|---|---|---|---|---|
| Base pair | σstack (Å) | δstack (kcal/mol) | Base pair | σstack (Å) | δstack (kcal/mol) |
| A-A | 3.6 | 9.7 | T-C | 3.6 | 6.9 |
| A-T | 3.6 | 8.6 | T-G | 3.6 | 9.2 |
| A-C | 3.6 | 7.8 | C-C | 3.6 | 6.2 |
| A-G | 3.6 | 10.3 | C-G | 3.6 | 8.3 |
| T-T | 3.6 | 7.7 | G-G | 3.6 | 11.0 |
| rstack (Å) = 6.2 | |||||