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. Author manuscript; available in PMC: 2024 Mar 4.
Published in final edited form as: Nat Microbiol. 2023 Jun 12;8(8):1495–1507. doi: 10.1038/s41564-023-01406-x

Extended Data Table 3 |.

Stanford sepsis cohort pathogen associated phage Mann-Whitney summary

Pathogen Pathogen associated phage proportion Pathogen associated phage diversity
Mean Cx (+) Mean Cx (−) Difference between means (Cx(+) − Cx(−)) ± SEM 95% CI Two sided P value Mean Cx (+) Mean Cx (−) Difference between means (Cx(+) − Cx(−)) ± SEM 95% CI Two sided P value
E. coli Cx (+) N = 16 0.2016 0.09605 0.1056 ± 0.03420 0.1775 to 0.03362 0.0017 2.816 2.004 0.8123 ± 0.3156 0.1562 to 1.468 0.0051
Streptococcus Cx (+) N = 12 0.0951 0.01237 0.08273 ± 0.01661 0.04950 to 0.1160 0.0018 1.89 0.5455 1.344 ± 0.3884 0.5671 to 2.122 0.0025
Staphylococcus Cx (+) N = 12 0.06656 0.01143 0.05513 ± 0.01540 0.02430 to 0.08595 0.0094 1.587 0.5709 1.016 ± 0.3194 0.3770 to 1.655 0.0192
Klebsiella Cx (+) N = 7 0.1046 0.0196 0.08503 ± 0.01557 0.05389 to 0.1162 0.0056 1.631 0.7888 0.8424 ± 0.4046 0.03285 to 1.652 0.0272