Table 2.
List of the significant SNPs associated with shoot dry weight (SDW) under salt stress conditions identified in this study.
| SNP | CH | POS | REF/ALT | MAF | Effect | SE | p-valuea | Candidate |
|---|---|---|---|---|---|---|---|---|
| 16218_44 | 1 | 44736380 | T/A | 0.27 | −0.2031 | 0.03216 | 4.41E−11 | Pv5-593.01G186800 |
| 17835_45 | 1 | 49131404 | T/C | 0.46 | −0.7432 | 0.07049 | 2.76E−21 | Pv5-593.01G236100 |
| 27203_199 | 2 | – | T/C | 0.32 | −0.1643 | 0.03304 | 3.34E−08 | – |
| 70878_186 | 5 | 2688353 | A/C | 0.43 | −0.2076 | 0.03505 | 7.96E−10 | Pv5-593.05G028500 |
| 93085_71 | 6 | 17316822b | G/A | 0.1 | 0.4446 | 0.06382 | 4.18E−12 | – |
| 139379_50 | 9 | 14050364 | C/T | 0.15 | 0.3914 | 0.05776 | 1.04E−11 | Pv5-593.09G089900 |
| 166314_95 | 11 | 10594412 | C/A | 0.07 | 0.5662 | 0.07608 | 1.77E−13 | Pv5-593.11G099400 |
For each SNP name (SNP), chromosome (CH), physical position (POS), reference and alternative allele (REF/ALT), minor allele frequency (MAF), effect (effect), standard error (SE), significance of detected association (p-value) and best candidate gene identified are reported.
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