TABLE 2.
Genome characteristics of B. cepacia and B. thailandensis strains sequenced in this study
| Species | Strain name | Source | Genome size (bp) | No. of chromosomes (size) | No. of plasmids (size) | % G+C | Location of CPS gene cluster (locus tags) | GenBank accession no. | SRA accession no. |
|---|---|---|---|---|---|---|---|---|---|
| B. cepacia | LNT40 | Environmental | 8,585,420 | 3: contig.0_1 (3,670,428 bp), contig.1_1 (1,309,270 bp), contig.2_1 (3,605,722 bp) | 0 | 66.7 | contig.0_1: 232284–266734 (C7S13_0262–C7S13_0285) | SAMN08724753 | SRS20034251 |
| B. cepacia | 39628 | Clinical | 8,403,907 | 3: contig.0_1 (3,683,734 bp), contig.1_1 (1,304,848 bp), contig.2_1 (3,415,325 bp) | 0 | 66.8 | contig.0_1: 268641–303096 (C7S14_3743–C7S14_3766) | SAMN08724754 | SRS20041683 |
| B. cepacia | 10223 | Clinical | 8,703,468 | 3: contig.0_1 (3,848,587 bp), contig.1_1 (3,329,779 bp), contig.3_1 (1,312,533 bp) | 1 contig.2_1 (212,569 bp) |
66.4 | contig.0_1: 990599–1025048 (C7S15_1049–C7S15_1072) | SAMN08724755 | SRS20034250 |
| B. thailandensis | SBXCC001 | Environmental | 6,842,881 | 2: contig.0_1 (3,018,887 bp), contig.1_1 (3,823,994 bp) | 0 | 67.7 | contig.1_1: 1809273–1843756 (C7S16_1973–C7S16_2004) | SAMN08724756 | SRS20034253 |
| B. thailandensis | SBXPR001 | Environmental | 7,015,772 | 2: contig.0_1(3,095,076 bp), contig.1_1 (3,920,696 bp) | 0 | 67.5 | contig.1_1: 2170112–2204606 (C7S17_2372–C7S17_2396) | SAMN08724757 | SRS20034727 |