Table 5.
Two-way Venn comparisons of the components.
| Components | Comparison | ||||
|---|---|---|---|---|---|
| #1 | #2 | Unique to #1 | Shared | Unique to #2 | |
| Microbiome | |||||
| Manure | Lagoon | 226 (26.2) | 288 (33.3) | 350 (40.5) | |
| Trough | 375 (53.4) | 139 (19.8) | 188 (26.8) | ||
| House Fly | 347 (43.3) | 167 (20.8) | 288 (35.9) | ||
| Stable Fly | 355 (48.4) | 159 (21.6) | 220 (30.0) | ||
| Lagoon | Trough | 508 (60.8) | 130 (15.6) | 197 (23.6) | |
| House Fly | 521 (53.4) | 117 (12.0) | 338 (34.6) | ||
| Stable Fly | 511 (57.4) | 127 (14.3) | 252 (28.3) | ||
| Trough | House Fly | 255 (40.0) | 72 (10.1) | 383 (53.9) | |
| Stable Fly | 235 (38.3) | 92 (15.0) | 287 (46.7) | ||
| House Fly | Stable Fly | 189 (33.3) | 266 (46.8) | 113 (19.9) | |
| Pathogenic Species | |||||
| Manure | Lagoon | 16 (41.0) | 16 (41.0) | 7 (18.0) | |
| Trough | 20 (52.6) | 12 (31.6) | 6 (15.8) | ||
| House Fly | 13 (19.4) | 19 (28.4) | 35 (52.2) | ||
| Stable Fly | 19 (30.6) | 13 (21.0) | 30 (48.4) | ||
| Lagoon | Trough | 14 (43.8) | 9 (28.1) | 9 (28.1) | |
| House Fly | 10 (15.6) | 13 (20.3) | 41 (64.1) | ||
| Stable Fly | 13 (23.2) | 10 (17.9) | 33 (58.9) | ||
| Trough | House Fly | 8 (12.9) | 10 (16.1) | 44 (71.0) | |
| Stable Fly | 10 (18.9) | 8 (15.1) | 35 (66.0) | ||
| House Fly | Stable Fly | 17 (28.3) | 37 (61.7) | 6 (10.0) | |
Comparisons of the number (percent) of unique and shared species in the total microbiome (n = 1,326) and the pathogenic species (n = 79) using a pairwise comparison associated with each component sampled within the dairy. The species from cross-vent and flow-through management system areas are combined.