Table 2. Comparisons of significant gene alteration frequency in GEPNEC and LNEC patients.
Gene | % (n/N) | OR (95% CI) | P | FDR | |
GEPNEC | LNEC | ||||
GEPNEC, gastroenteropancreatic neuroendocrine carcinoma; LNEC, lung NEC; OR, odds ratio; 95% CI, 95% confidence interval; FDR, false discovery rate; Inf and −Inf, infinitive and −infinitive. | |||||
TP53 (mutation) | 82.8 (82/99) | 56.1 (32/57) | 0.27 (0.12−0.59) | 0.001 | 0.005 |
NKX2-1 (amplification) | 0 (0/99) | 10.5 (6/57) | Inf (2.17−Inf) | 0.002 | 0.005 |
PIK3CA (amplification) | 0 (0/99) | 10.5 (6/57) | Inf (2.17−Inf) | 0.002 | 0.005 |
KRAS (mutation) | 21.2 (21/99) | 3.5 (2/57) | 0.14 (0.01−0.60) | 0.002 | 0.005 |
TERT (amplification) | 13.1 (13/99) | 0 (0/57) | 0 (0−0.52) | 0.002 | 0.006 |
IL7R (amplification) | 10.1 (10/99) | 0 (0/57) | 0 (0−0.73) | 0.014 | 0.023 |
CTNNB1 (mutation) | 16.2 (16/99) | 3.5 (2/57) | 0.19 (0.02−0.86) | 0.019 | 0.027 |
GRIN2A (mutation) | 1.0 (1/99) | 8.8 (5/57) | 9.29 (1.00−449.03) | 0.025 | 0.028 |
PTPRD (mutation) | 1.0 (1/99) | 8.8 (5/57) | 9.29 (1.00−449.03) | 0.025 | 0.028 |
RB1 (mutation) | 38.4 (38/99) | 49.1 (28/57) | 1.48 (0.95−8.46) | 0.042 | 0.050 |