TABLE 2.
Host class, order, and family | Host species | Retroviral sequencea |
---|---|---|
Aves | ||
Anseriformes | ||
Anatidae (swans, geese, and ducks) | White-fronted goose (Anser albifrons) | RV-White-fronted goose (1) |
North American black duck (Anas rubripes) | RV-Black duck I (0) | |
RV-Black duck II (0) | ||
RV-Black duck III (4) | ||
RV-Black duck IV (0) | ||
Apterygiformes, Apterygidae (kiwis) | Brown kiwi (Apteryx australis) | RV-Brown kiwi (0) |
Great spotted kiwi (Apteryx haastii) | RV-Great spotted kiwi (0) | |
Little spotted kiwi (Apteryx owenii) | RV-Little spotted kiwi I (1) | |
RV-Little spotted kiwi II (1) | ||
Casuariformes | ||
Casuariidae (cassowaries) | Cassowary (Casuarius casuarius) | RV-Cassowary (0) |
Dromaiidae (emu) | Emu (Dromaius novaehollandiae) | RV-Emu (1) |
Phoenicopteridae (flamingos) | Chilean flamingo (Phoenicopterus ruber chilensis) | RV-Flamingo (2) |
Columbiformes, Columbidae (pigeons) | Wood pigeon (Columba palumbus) | RV-Wood pigeon II (0) |
Falconiformes | ||
Accipritidae (hawks, eagles, and | Goshawk (Accipiter gentilis) | RV-Goshawk (0) |
Old World vultures) | Marsh harrier (Circus aeruginosus) | RV-Marsh harrier I (0) |
Ferruginous hawk (Buteo regalis) | RV-Marsh harrier II (0) | |
RV-Ferruginous hawk (1) | ||
Cathartidae (New World vultures) | Turkey vulture (Cathartes aura) | RV-Turkey vulture (0) |
Falconidae (typical falcons) | Peregrine falcon (Falco peregrinus) | RV-Peregrine falcon (0) |
Galliformes | ||
Numididae (guineafowl and | Vulturine guineafowl (Acryllium vulturinum) | RV-Guineafowl I (2) |
World vultures) | Marsh harrier (Circus aeruginosus) | RV-Guineafowl II (1) |
Golden pheasant (Chrysolophus pictus) | RV-Golden pheasant (3) | |
Japanese quail (Coturnix japonica) | RV-Japanese quail (6) | |
Ring-necked pheasant (Phasianus colchicus) | RV-Ring-necked pheasant II (2) | |
Blue peacock (Pavo cristatus) | RV-Blue peacock I (4) | |
RV-Blue peacock II (2) | ||
Gray partridge (Perdix perdix) | RV-Grey partridge III (6) | |
Cabot's Tragopan (Tragopan caboti) | RV-Tragopan (0) | |
Tetraonidae (grouse) | Black grouse (Lyrurus tetrix) | RV-Black grouse (0) |
Gaviiformes, Gaviidae (loons) | Common loon (Gavia immer) | RV-Common loon I (2) |
RV-Common loon II (1) | ||
Gruiformes, Rallidae (rails) | Gray moorhen (Gallinula chloropus) | RV-Gray moorhen I (0) |
RV-Gray moorhen II (1) | ||
Passeriformes | ||
Muscicapidea (thrushes) | Hermit thrush (Catharus guttatus) | RV-Hermit thrush I (2) |
RV-Hermit thrush II (2) | ||
RV-Hermit thrush III (0) | ||
RV-Hermit thrush IV (0) | ||
Mistle thush (Turdus viscivorus) | RV-Mistle thrush (6) | |
Paridae (true tits) | Blue tit (Parus caeruleus) | RV-Blue tit I (3) |
RV-Blue tit II (0) | ||
RV-Blue tit III (1) | ||
Corvidae (crows) | Common magpie (Pica pica) | RV-Common magpie II (1) |
RV-Common magpie III (1) | ||
RV-Common magpie IV (4) | ||
Azure-winged magpie (Cyanopica cyana) | RV-Azure-winged magpie (2) | |
Piciformes | ||
Picidae (woodpeckers) | Green woodpecker (Picus viridis) | RV-Green woodpecker (2) |
Rhamphastidae (toucans) | Golden-collared toucanet (Selenidera reinwardtii) | RV-Toucanet I (0) |
RV-Toucanet II (3) | ||
Rheiformes, Rheidae (rheas) | Greater rhea (Rhea americana) | RV-Greater rhea (0) |
Darwin's rhea (Pterocnemia pennata) | RV-Darwin's rhea (0) | |
Sphenisciformes, Spheniscidae (penguins) | King penguin (Aptenodytes patagonicus) | RV-King penguin (0) |
Strigiformes, Strigidae (typical owls) | Eastern screech owl (Otus asio) | RV-Eastern screech owl I (4) |
RV-Eastern screech owl II (5) | ||
Struthioniformes, Struthionidae (ostriches) | North African ostrich (Struthio camelus) | RV-Ostrich (1) |
Tinamiformes, Tinamidae (tinamous) | Elegant-crested tinamou (Eudromia elegans) | RV-Elegant-crested tinamou (1) |
Mammalia | ||
Artiodactyla | ||
Bovidae (antelope, cattle, sheep, goats, | American bison (Bison bison) | RV-Bison (1) |
and relatives) | Musk ox (Ovibos moschatus) | RV-Musk ox (0) |
Domestic goat (Capra hircus) | RV-Goat (0) | |
Cervidae (deer) | Caribou (Rangifer tarandus) | RV-Caribou (4) |
White-tailed deer (Odocoileus virginianus) | RV-White-tailed deer (3) | |
Giraffidae (giraffe and okapi) | Giraffe (Giraffa camelopardalis) | RV-Giraffe (3) |
Carnivora | ||
Felidae (cats) | Cougar (Felis concolor) | RV-Cougar (6) |
Domestic cat (Felis catus) | RV-Domestic cat (5) | |
Mustelidae (weasels and relatives) | Small mongoose (Herpestes javanicus) | RV-Small mongoose I (1) |
RV-Small mongoose II (2) | ||
RV-Small mongoose III (2) | ||
Chinese ferret badger (Melogale moschata) | RV-Chinese badger (2) | |
Cetacea, Delphinidae (dolphins) | Risso's dolphin (Grampus griseus) | RV-Risso's dolphin (1) |
Insectivora, Erinacidae (hedgehogs) | European hedgehog (Erinaceus europaeus) | RV-European hedgehog (12) |
Lagomorpha, Leporidae (rabbits and hares) | European rabbit (Oryctolagus cuniculus) | RV-European rabbit (0) |
Marsupialia, Macropodidae (kangaroos) | Red kangaroo (Macropus rufus) | RV-Red kangaroo (1) |
Monotremata | ||
Ornithoryhnchidae (platypus) | Duck-billed platypus (Ornithorhynchus anatinus) | RV-Duck-billed platypus (1) |
Tachyglossidae (echidna) | Short-beaked echidna (Tachyglossus aculeatus) | RV-Echidna II (2) |
Primates | ||
Lorisidae (bush babies) | Slow loris (Nycticebus coucang) | RV-Slow loris (0) |
Cercopithidae (Old world monkeys) | Black colobus (Colobus angolensis) | RV-Colobus (0) |
Rodentia | ||
Muridae (rats and mice) | African grass rat (Arvicanthis ansorgei) | RV-Grass rat I (0) |
RV-Grass rat II (4) | ||
House mouse (Mus musculus) | RV-House mouse (ND) | |
Shrew mouse (Mus pahari) | RV-Shrew mouse (7) | |
Rice rat (Oryzomys intermedius) | RV-Rice rat (1) | |
Multimammate rat (Mastomys huberti) | RV-Multimammate rat (2) | |
Bismark giant rat (Uromys neobritannicus) | RV-Giant rat (1) | |
Yemeni mouse Myomys yemeni) | RV-Yemeni mouse (5) | |
Brown rat (Rattus norvegicus) | RV-Brown rat I (ND) | |
RV-Brown rat II (ND) | ||
Sciuridae (squirrels and relatives) | Prairie dog (Cynomys ludovicianus) | RV-Prairie dog (0) |
The sum of nonsense mutations (stop codons or frameshifts) within each viral fragment is given in parentheses. ND, not done.