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. Author manuscript; available in PMC: 2025 Mar 1.
Published in final edited form as: Curr Protoc. 2024 Mar;4(3):e938. doi: 10.1002/cpz1.938

Table 2.

Troubleshooting Guide for Immunohistochemistry assay

Problem Possible Cause Solution
High background staining Secondary antibody cross-reactivity or nonspecific binding is present Increase the serum concentration, alternatively, decrease the concentration of the secondary antibody.
Issues with the primary antibody, which may show an affinity for similar epitopes on non-target antigens Reduce the concentration of the primary antibody, adjust the concentration of triton-x in the blocking solution, or use a different primary antibody.
Weak target staining Poor primary antibody potency (due to protein degradation/denaturation caused by long-term storage, repetitive freeze/thaw cycles, microbial contamination, changes in pH, etc. Ensure that the antibody is correctly stored (at −20C or 4C) according to the manufacturer’s instructions in small aliquots, use sterile pipette tips and tubes.