# Install tools required for the analysis.

conda install -c anaconda pandas

conda install -c conda-forge matplotlib

conda install -c anaconda seaborn

conda install -c bioconda Cutadapt

conda install -c bioconda rnastructure

# After installing rnastructure, you will need to add a DATAPATH to the data_tables in rnastructure to .bashrc file.

# For the installation of shapemapper2 (See https://github.com/Weeks-UNC/shapemapper2), download the file

wget https://github.com/Weeks-UNC/ShapeMapper2/releases/download/2.1.5/shapemapper-2.1.5.tar.gz

# Extract release tarball with

tar -xvf shapemapper-2.1.5.tar.gz

#Add shapemapper executable to PATH