Table 2.
Interactive residues and bonding nature of ligand isolated from PRME against OCN protein
| Sl No | PubChem ID | Binding Energy (Kcal/Mol) | Interacting Residues | Bond Distance | Nature of Bonding |
|---|---|---|---|---|---|
| 1 | 8468 (Vanillic acid) | -6.5644 |
B:ARG310:NH1—8468:O3 A:GLN77:HE22—8468:O2 D:DT427:H3'—8468:O2 A:ALA56:HA—8468:O4 8468:H16—8468:O2 8468:H17—A:SER51:OG A:PHE58—8468 8468—A:ALA56 |
5.54422 2.4914 2.5872 2.0976 1.92944 2.7905 4.3633 3.60906 |
Electrostatic Hydrogen Bond Hydrogen Bond Hydrogen Bond Hydrogen Bond Hydrogen Bond Hydrophobic Hydrophobic |
| 2 | 73,160 (Catechin) | 37.2972 |
73,160:H24—D:DT427:O5' 73,160:H26—C:DG412:N3 C:DG412:H4'—73,160:O6 D:DT427:H4'—73,160:O1 C:DA413 – 73,160 |
3.01151 2.39609 2.95116 2.06376 5.59696 |
Hydrogen Bond Hydrogen Bond Hydrogen Bond Hydrogen Bond Hydrophobic |
| 3 | 25,200,612 (Ergost-4-en-3-one) | 46.5173 |
A:HIS75:HD1—25,200,612:O1 A:HIS75:HE1—25,200,612:O1 A:ALA56—25,200,612:C28 A:ALA56—25,200,612:C29 B:LEU295—25,200,612 B:LYS303—25,200,612 25,200,612:C20—B:ARG302 25,200,612:C20—B:LYS303 25,200,612:C27—B:ARG302 25,200,612:C27—B:MET306 25,200,612:C28—B:MET306 25,200,612:C29—A:LEU57 25,200,612:C29—B:MET306 A:PHE58—25,200,612:C14 |
2.27374 3.06936 3.17387 4.40991 4.91908 5.42733 4.8078 4.30829 4.05717 4.70663 4.47031 5.30964 4.59387 4.88684 |
Hydrogen Bond Hydrogen Bond Hydrophobic Hydrophobic Hydrophobic Hydrophobic Hydrophobic Hydrophobic Hydrophobic Hydrophobic Hydrophobic Hydrophobic Hydrophobic Hydrophobic |
| 4 |
2088 (Alendronic acid) |
-25.4610 |
C:DG412:H22—2088:O6 C:DG412:H22—2088:O9 2088:H16—C:DA413:O4' 2088:H20—D:DT428:O4' 2088:H21—C:DT411:O2 2088:H21—D:DT427:O2 C:DG412:H4'—2088:O4 C:DG412:H1'—2088:O9 D:DA426:H2—2088:O6 2088:H27—C:DT411:O2 |
2.43994 2.57252 2.10275 1.98272 2.30904 1.98139 2.31342 2.6587 2.9243 2.45617 |
Hydrogen Bond Hydrogen Bond Hydrogen Bond Hydrogen Bond Hydrogen Bond Hydrogen Bond Hydrogen Bond Hydrogen Bond Hydrogen Bond Hydrogen Bond |