Figure 1.

Venn diagrams showing the number of differentially expressed (DE) genes identified by pipeline for each dataset. The number in the center represents all genes identified as differentially expressed by all pipelines. All other overlaps include the number of genes identified as DE by the pipelines represented in the overlap. In the human cell dataset a total of 24768 DE genes were detected, of which 84.7% were concordant in all pipeline settings. For the Arabidopsis dataset these were 4370 DE genes with 84.9% concordant identifications and in the zebrafish dataset 8305 DE genes with 84.0% concordant hits.