KEY RESOURCES TABLE
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
Antibodies | ||
CTL-IgG | Bujotzek et al. 2016 | PDB: 5DMG |
CD98hc IgG | Yasutomo et al. 2013 | N/A |
TfR-1 IgG | Kissel et al. 1998 | N/A |
CTL-IgG/CD98-scFv | This paper | Genbank: OR253074 |
CTL-IgG/TfR-1-scFv | This paper | Genbank: OR253073 |
M2 | Dr. Carl Lagenaur | N/A |
M6 | Dr. Carl Lagenaur | N/A |
29D7 | Qian et al. 2006 | N/A |
TrkB-IgG/CD98-scFv | This Paper | Genbank: OR253075 |
Goat anti-human IgG AlexaFluor 647 | Jackson ImmunoResearch | Cat#109-605-098 |
Goat anti-human IgG AlexaFluor 488 | Jackson ImmunoResearch | Cat#109-546-170 |
R17 | BioLegend | Cat#113802 |
RL388 | BioLegend | Cat#128202 |
Mouse anti-rat IgG AlexaFluor 647 | BioLegend | Cat#407511 |
Anti-human Polyvalent Immunoglobulins (G,A,M) | Millipore Sigma | Cat#I1761 |
Goat anti-human IgG-peroxidase | Millipore Sigma | Cat#A0170 |
NeuN Monoclonal Antibody (1B7) | Thermo Fisher Scientific | Cat#MA5–33103 |
GFAP Polyclonal Antibody | Thermo Fisher Scientific | Cat#PA1–10019 |
Phospho-AKT1 (Ser473) Monoclonal Antibody | Thermo Fisher Scientific | Cat#44–621G |
Phospho-ERK1/ERK2 (Thr202. Tyr204) Polyclonal Antibody | Thermo Fisher Scientific | Cat#36–8800 |
ZO-1 Monoclonal Antibody (ZO1–1A12), AlexaFluor 488 | Thermo Fisher Scientific | Cat#339188 |
Akt (pan) (11E7) Rabbit mAb | Cell Signaling Technology | Cat#4685 |
P44/42 MAPK (Erk1/2) Antibody | Cell Signaling Technology | Cat#9102 |
TrkB (80E3) Rabbit mAb | Cell Signaling Technology | Cat#4603 |
Phospho-Akt (Ser473) (D9E) Rabbit mAb | Cell Signaling Technology | Cat#4060 |
Phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) Antibody | Cell Signaling Technology | Cat#9101 |
Phospho-TrkB (Tyr516) Polyclonal Antibody | Thermo Fisher Scientific | Cat#PA5–36695 |
Anti-rabbit IgG HRP-linked Antibody | Cell Signaling Technology | Cat#7074 |
Bacterial and virus strains | ||
DH5α | Thermo Fisher Scientific | Cat#18265017 |
Biological samples | ||
None | ||
Chemicals, peptides, and recombinant proteins | ||
DMEM media | Corning | Cat#10-013-CV |
BSA | Thermo Fisher Scientific | Cat#BP9706–100 |
0.25% trypsin-EDTA | Gibco | Cat#25200056 |
Antibiotic-antimycotic | Gibco | Cat#15240062 |
FBS | Corning | Cat#35-010-CV |
RPMI media | Corning | Cat#10-040-CV |
Lipofectamine 2000 | Invitrogen | Cat#11668–027 |
EcoRI-HF | New England Biolabs | Cat#R3101L |
XbaI | New England Biolabs | Cat#R0145S |
Q5 High-Fidelity DNA Polymerase | New England Biolabs | Cat#M0491L |
NheI-HF | New England Biolabs | Cat#R3131L |
HindIII-HF | New England Biolabs | Cat#R3104L |
Quick CIP calf intestinal alkaline phosphatase | New England Biolabs | Cat#M0525L |
T4 ligase | New England Biolabs | Cat#M0202L |
F17 media | Thermo Fisher Scientific | Cat#A1383502 |
Glutamine | Invitrogen | Cat#25030081 |
Kolliphor | Thermo Fisher Scientific | Cat#NC0917244 |
G418 | Thermo Fisher Scientific | Cat#10131035 |
Yeastolate | BD Sciences | Cat#292804 |
Streptavidin AlexaFluor 647 | Invitrogen | Cat#S32357 |
Imidazole | ACROS Organics | Cat#12202–5000 |
Mouse TfR | ACRO Biosystems | Cat#TFR-M524b |
[125I]NaI | Perkin Elmer | Cat#NEZ033A |
Pierce iodination reagent | Thermo Fisher Scientific | Cat#28601 |
Phusion HF PCR MasterMix w/ HF Buffer | New England Biolabs | Cat#M0531S |
Methanol | Thermo Fisher Scientific | Cat#A421–4 |
Sodium acetate | Sigma-Aldrich | Cat#S2889–250G |
Isoflurane | Henry Schein | Cat#66794-017-25 |
Trypan blue | Gibco | Cat#15250061 |
Krebs buffer | Thermo Fisher Scientific | Cat#J67591.AP |
Dextran | Acros | Cat#406271000 |
RIPA buffer | Thermo Fisher Scientific | Cat#WK333492 |
100X Halt Protease Inhibitors | Thermo Fisher Scientific | Cat#1860932 |
Goat serum | Novus Biologicals | Cat#S13150NOV |
Tween 20 | Thermo Fisher Scientific | Cat#J20605-AP |
TMB substrate solution | Thermo Fisher Scientific | Cat#N301 |
H2SO4 | Thermo Fisher Scientific | Cat#A300–212 |
Sodium bicarbonate | Sigma-Aldrich | Cat#S6297–250G |
4% paraformaldehyde | Thermo Fisher Scientifice | Cat#J19943.K2 |
Sucrose | Thermo Fisher Scientific | Cat#S5–500 |
OCT | Thermo Fisher Scientific | Cat#4585 |
Sodium citrate buffer | Thermo Fisher Scientific | Cat#S279–3 |
0.5% Triton-X 100 | Alfa Aesar | Cat#A16046 |
DAPI | Thermo Fisher Scientific | Cat#YC3861511 |
Anti-fade reagent | Thermo Fisher Scientific | Cat#P36930 |
Dry milk | Kroger | N/A |
Phosphatase and protease inhibitor cocktail 100X | Thermo Fisher Scientific | Cat#P178440 |
20% SDS | Dot Scientific Inc. | Cat#DSL23100–500 |
Trizma base | Sigma-Aldrich | Cat#T1503–1KG |
HCl | Thermo Fisher Scientific | Cat#SA56–4 |
β-mercaptoethanol | ACROS Organics | Cat#125472500 |
Glycerol | Thermo Fisher Scientific | Cat#BP229–1 |
EDTA | Thermo Fisher Scientific | Cat#O2793–500 |
Bromophenol blue | Thermo Fisher Scientific | Cat#A18469.09 |
SignalFire ECL Reagent | Cell Signaling Technology | Cat#6883 |
Critical commercial assays | ||
Pierce BCA Protein Assay Kit | Thermo Fisher Scientific | Cat#23227 |
Deposited data | ||
Antibody Sequences | GenBank | OR253073–5 |
Experimental models: Cell lines | ||
Human: HEK293–6E | National Research Council (NRC) of Canada | N/A |
Human: REN-CD98hc | This paper | N/A |
Human: REN-TfR | This paper | N/A |
Human: REN-mTrkB | This paper | N/A |
Mouse: bEnd.3 | ATCC | Cat#CRL-2299 |
Experimental models: Organisms/strains | ||
C57BL/6J mice | Jackson Laboratory | Strain#000664 |
Oligonucleotides | ||
None | ||
Recombinant DNA | ||
None | ||
Software and algorithms | ||
Prism 9.5.1 | GraphPad | https://www.graphpad.com/updates/prism-951-release-notes |
Python 3.11.5 | Python Software Foundation | https://www.python.org |
Data fitting algorithm | This Paper | DOI: 10.5281/zenodo.8317352 |
Other | ||
Streptavidin MicroBeads | Miltenyi Biotec | Cat#130-048-101 |
Streptavidin Dynabeads | Invitrogen | Cat#11047 |
Protein A magnetic beads | Invitrogen | Cat#88846 |
QIAquick Gel Extraction Kit | Qiagen | Cat#28704 |
QIAquick PCR Purification Kit | Qiagen | Cat#28104 |
QIAprep Spin Miniprep Kit | Qiagen | Cat#27106 |
Protein A Agarose | Thermo Fisher Scientific | Cat#20333 |
Centrifuge columns | Thermo Fisher Scientific | Cat#89898 |
Zeba Spin Desalting Columns | Thermo Fisher Scientific | Cat#89894; Cat#89892; Cat#89890 |
Invitrogen NuPAGE 10% Bis-Tris, 1.0 mm, Midi Protein GEL (SDS-PAGE) | Thermo Fisher Scientific | Cat#WG1203BOX |
Superdex 200 Increase 10/300 GL column | GE | Cat#28990944 |
96-well plates | VWR | Cat#650261 |
Protein A Dynabeads | Invitrogen | Cat#10002D |
Ni-NTA agarose | Qiagen | Cat#30230 |
Heparin-coated capillary tubes | Thermo Fisher Scientific | Cat#22–3652566 |
TissueLyser LT | Qiagen | Cat#85600 |
Immulon 4HBX flat bottom plates | Thermo Fisher Scientific | Cat#3855 |
30kDa MW centrifugal filter | Millipore Sigma | Cat#UFC503096 |
IVIS Lumina S5 | Perkin Elmer | |
Cryostat | Leica | Cat#NX50 |
Glass slides | Thermo Fisher Scientific | Cat#1255015 |
Hydrophobic pen | Vector Laboratories | Cat#H-4000 |
Coverslip | Thermo Fisher Scientific | Cat#12543D |
Confocal microscope | Nikon | A1si |
Flow cytometer, ZE5 cell analyzer | Bio-Rad | Cat#12004278 |
6-well plates | Thermo Fisher Scientific | Cat#140675 |
TLC silica gel 60F254 plates | Millipore Sigma | Cat#105554 |
4–12% Bis-Tris SDS-PAGE gel | Thermo Fisher Scientific | Cat#WG1401A |
MagicMark XP western Protein Standard | Thermo Fisher Scientific | Cat#LC5602 |
Nitrocellulose membrane | Thermo Fisher Scientific | Cat#IB23001 |
iBlot 2 Dry Transfer System | Thermo Fisher Scientific | Cat#IB21001 |