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. Author manuscript; available in PMC: 2025 Feb 15.
Published in final edited form as: Cell Chem Biol. 2023 Oct 26;31(2):361–372.e8. doi: 10.1016/j.chembiol.2023.09.008

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
CTL-IgG Bujotzek et al. 2016 PDB: 5DMG
CD98hc IgG Yasutomo et al. 2013 N/A
TfR-1 IgG Kissel et al. 1998 N/A
CTL-IgG/CD98-scFv This paper Genbank: OR253074
CTL-IgG/TfR-1-scFv This paper Genbank: OR253073
M2 Dr. Carl Lagenaur N/A
M6 Dr. Carl Lagenaur N/A
29D7 Qian et al. 2006 N/A
TrkB-IgG/CD98-scFv This Paper Genbank: OR253075
Goat anti-human IgG AlexaFluor 647 Jackson ImmunoResearch Cat#109-605-098
Goat anti-human IgG AlexaFluor 488 Jackson ImmunoResearch Cat#109-546-170
R17 BioLegend Cat#113802
RL388 BioLegend Cat#128202
Mouse anti-rat IgG AlexaFluor 647 BioLegend Cat#407511
Anti-human Polyvalent Immunoglobulins (G,A,M) Millipore Sigma Cat#I1761
Goat anti-human IgG-peroxidase Millipore Sigma Cat#A0170
NeuN Monoclonal Antibody (1B7) Thermo Fisher Scientific Cat#MA5–33103
GFAP Polyclonal Antibody Thermo Fisher Scientific Cat#PA1–10019
Phospho-AKT1 (Ser473) Monoclonal Antibody Thermo Fisher Scientific Cat#44–621G
Phospho-ERK1/ERK2 (Thr202. Tyr204) Polyclonal Antibody Thermo Fisher Scientific Cat#36–8800
ZO-1 Monoclonal Antibody (ZO1–1A12), AlexaFluor 488 Thermo Fisher Scientific Cat#339188
Akt (pan) (11E7) Rabbit mAb Cell Signaling Technology Cat#4685
P44/42 MAPK (Erk1/2) Antibody Cell Signaling Technology Cat#9102
TrkB (80E3) Rabbit mAb Cell Signaling Technology Cat#4603
Phospho-Akt (Ser473) (D9E) Rabbit mAb Cell Signaling Technology Cat#4060
Phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) Antibody Cell Signaling Technology Cat#9101
Phospho-TrkB (Tyr516) Polyclonal Antibody Thermo Fisher Scientific Cat#PA5–36695
Anti-rabbit IgG HRP-linked Antibody Cell Signaling Technology Cat#7074
Bacterial and virus strains
DH5α Thermo Fisher Scientific Cat#18265017
Biological samples
None
Chemicals, peptides, and recombinant proteins
DMEM media Corning Cat#10-013-CV
BSA Thermo Fisher Scientific Cat#BP9706–100
0.25% trypsin-EDTA Gibco Cat#25200056
Antibiotic-antimycotic Gibco Cat#15240062
FBS Corning Cat#35-010-CV
RPMI media Corning Cat#10-040-CV
Lipofectamine 2000 Invitrogen Cat#11668–027
EcoRI-HF New England Biolabs Cat#R3101L
XbaI New England Biolabs Cat#R0145S
Q5 High-Fidelity DNA Polymerase New England Biolabs Cat#M0491L
NheI-HF New England Biolabs Cat#R3131L
HindIII-HF New England Biolabs Cat#R3104L
Quick CIP calf intestinal alkaline phosphatase New England Biolabs Cat#M0525L
T4 ligase New England Biolabs Cat#M0202L
F17 media Thermo Fisher Scientific Cat#A1383502
Glutamine Invitrogen Cat#25030081
Kolliphor Thermo Fisher Scientific Cat#NC0917244
G418 Thermo Fisher Scientific Cat#10131035
Yeastolate BD Sciences Cat#292804
Streptavidin AlexaFluor 647 Invitrogen Cat#S32357
Imidazole ACROS Organics Cat#12202–5000
Mouse TfR ACRO Biosystems Cat#TFR-M524b
[125I]NaI Perkin Elmer Cat#NEZ033A
Pierce iodination reagent Thermo Fisher Scientific Cat#28601
Phusion HF PCR MasterMix w/ HF Buffer New England Biolabs Cat#M0531S
Methanol Thermo Fisher Scientific Cat#A421–4
Sodium acetate Sigma-Aldrich Cat#S2889–250G
Isoflurane Henry Schein Cat#66794-017-25
Trypan blue Gibco Cat#15250061
Krebs buffer Thermo Fisher Scientific Cat#J67591.AP
Dextran Acros Cat#406271000
RIPA buffer Thermo Fisher Scientific Cat#WK333492
100X Halt Protease Inhibitors Thermo Fisher Scientific Cat#1860932
Goat serum Novus Biologicals Cat#S13150NOV
Tween 20 Thermo Fisher Scientific Cat#J20605-AP
TMB substrate solution Thermo Fisher Scientific Cat#N301
H2SO4 Thermo Fisher Scientific Cat#A300–212
Sodium bicarbonate Sigma-Aldrich Cat#S6297–250G
4% paraformaldehyde Thermo Fisher Scientifice Cat#J19943.K2
Sucrose Thermo Fisher Scientific Cat#S5–500
OCT Thermo Fisher Scientific Cat#4585
Sodium citrate buffer Thermo Fisher Scientific Cat#S279–3
0.5% Triton-X 100 Alfa Aesar Cat#A16046
DAPI Thermo Fisher Scientific Cat#YC3861511
Anti-fade reagent Thermo Fisher Scientific Cat#P36930
Dry milk Kroger N/A
Phosphatase and protease inhibitor cocktail 100X Thermo Fisher Scientific Cat#P178440
20% SDS Dot Scientific Inc. Cat#DSL23100–500
Trizma base Sigma-Aldrich Cat#T1503–1KG
HCl Thermo Fisher Scientific Cat#SA56–4
β-mercaptoethanol ACROS Organics Cat#125472500
Glycerol Thermo Fisher Scientific Cat#BP229–1
EDTA Thermo Fisher Scientific Cat#O2793–500
Bromophenol blue Thermo Fisher Scientific Cat#A18469.09
SignalFire ECL Reagent Cell Signaling Technology Cat#6883
Critical commercial assays
Pierce BCA Protein Assay Kit Thermo Fisher Scientific Cat#23227
Deposited data
Antibody Sequences GenBank OR253073–5
Experimental models: Cell lines
Human: HEK293–6E National Research Council (NRC) of Canada N/A
Human: REN-CD98hc This paper N/A
Human: REN-TfR This paper N/A
Human: REN-mTrkB This paper N/A
Mouse: bEnd.3 ATCC Cat#CRL-2299
Experimental models: Organisms/strains
C57BL/6J mice Jackson Laboratory Strain#000664
Oligonucleotides
None
Recombinant DNA
None
Software and algorithms
Prism 9.5.1 GraphPad https://www.graphpad.com/updates/prism-951-release-notes
Python 3.11.5 Python Software Foundation https://www.python.org
Data fitting algorithm This Paper DOI: 10.5281/zenodo.8317352
Other
Streptavidin MicroBeads Miltenyi Biotec Cat#130-048-101
Streptavidin Dynabeads Invitrogen Cat#11047
Protein A magnetic beads Invitrogen Cat#88846
QIAquick Gel Extraction Kit Qiagen Cat#28704
QIAquick PCR Purification Kit Qiagen Cat#28104
QIAprep Spin Miniprep Kit Qiagen Cat#27106
Protein A Agarose Thermo Fisher Scientific Cat#20333
Centrifuge columns Thermo Fisher Scientific Cat#89898
Zeba Spin Desalting Columns Thermo Fisher Scientific Cat#89894; Cat#89892; Cat#89890
Invitrogen NuPAGE 10% Bis-Tris, 1.0 mm, Midi Protein GEL (SDS-PAGE) Thermo Fisher Scientific Cat#WG1203BOX
Superdex 200 Increase 10/300 GL column GE Cat#28990944
96-well plates VWR Cat#650261
Protein A Dynabeads Invitrogen Cat#10002D
Ni-NTA agarose Qiagen Cat#30230
Heparin-coated capillary tubes Thermo Fisher Scientific Cat#22–3652566
TissueLyser LT Qiagen Cat#85600
Immulon 4HBX flat bottom plates Thermo Fisher Scientific Cat#3855
30kDa MW centrifugal filter Millipore Sigma Cat#UFC503096
IVIS Lumina S5 Perkin Elmer
Cryostat Leica Cat#NX50
Glass slides Thermo Fisher Scientific Cat#1255015
Hydrophobic pen Vector Laboratories Cat#H-4000
Coverslip Thermo Fisher Scientific Cat#12543D
Confocal microscope Nikon A1si
Flow cytometer, ZE5 cell analyzer Bio-Rad Cat#12004278
6-well plates Thermo Fisher Scientific Cat#140675
TLC silica gel 60F254 plates Millipore Sigma Cat#105554
4–12% Bis-Tris SDS-PAGE gel Thermo Fisher Scientific Cat#WG1401A
MagicMark XP western Protein Standard Thermo Fisher Scientific Cat#LC5602
Nitrocellulose membrane Thermo Fisher Scientific Cat#IB23001
iBlot 2 Dry Transfer System Thermo Fisher Scientific Cat#IB21001