Table 3.
Annotations of repeated sequences in hap1 and hap2.
| Element | Class | hap1 | hap2 | ||||
|---|---|---|---|---|---|---|---|
| Numbers | Length occupied (bp) | Percentage of sequence (%) | Numbers | Length occupied (bp) | Percentage of sequence (%) | ||
| LTR | Copia | 49,843 | 36,934,468 | 6.56 | 52,452 | 38,093,854 | 6.79 |
| Gypsy | 59,067 | 48,144,768 | 8.55 | 59,139 | 48,457,231 | 8.64 | |
| Unknown | 56,810 | 29,001,468 | 5.15 | 55,392 | 27,968,130 | 4.99 | |
| TIR | CACTA | 69,243 | 26,040,568 | 4.63 | 72,898 | 27,068,332 | 4.83 |
| Mutator | 72,764 | 20,818,845 | 3.7 | 72,396 | 20,322,553 | 3.62 | |
| PIF_Harbinger | 44,274 | 11,675,844 | 2.07 | 48,596 | 13,940,292 | 2.49 | |
| Tc1_Mariner | 4,654 | 1,481,269 | 0.26 | 4,706 | 1,325,219 | 0.24 | |
| hAT | 41,895 | 17,862,985 | 3.17 | 37,947 | 16,767,929 | 2.99 | |
| non LTR | LINE_element | 5,825 | 2,521,684 | 0.45 | 5,421 | 2,396,560 | 0.43 |
| nonTIR | Helitron | 61,104 | 15,839,016 | 2.81 | 55,772 | 14,959,035 | 2.67 |
| Repeat_region | 122,585 | 50,172,923 | 8.91 | 118,992 | 47,873,476 | 8.54 | |
| Total | 588,064 | 260,493,838 | 46.26 | 583,711 | 259,172,611 | 46.23 | |