Table 4.
Overview of the haplotype-resolved genome annotation.
| Annotation index | hap1 | hap2 |
|---|---|---|
| Gene model annotation | ||
| Number of gene models | 41,039 | 39,744 |
| Number of mRNA | 43,309 | 42,373 |
| Number of exon | 213,870 | 215,844 |
| Number of intron | 170,536 | 173,431 |
| Mean coding sequence length (bp) | 1,093 | 1,107 |
| Mean number of exons per mRNA | 4.94 | 5.09 |
| Mean exon length (bp) | 221 | 217 |
| Mean intron length (bp) | 693 | 736 |
| Non-coding RNA annotation | ||
| tRNA | 500 | 500 |
| rRNA | 72 | 104 |
| miRNA | 207 | 210 |
| snoRNA | 1,038 | 1,105 |
| Functional annotation | ||
| COG | 32,341 | 32,267 |
| GO | 18,069 | 18,055 |
| KEGG | 17,123 | 17,291 |
| Pfam | 31,305 | 31,219 |
| Total | 34,617 | 34,562 |